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Accession: PRJNA562166 ID: 562166

Acanthisitta chloris (Rifleman) genome, bAcaChl1

See Genome Information for Acanthisitta chloris
The Rifleman (Acanthisitta chloris) is an endemic bird to New Zealand and is also known as New Zealand wrens, or Titipounamu in Maori. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by the Olivier Fedrigo, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Tom Gilbert and Erich Jarvis from B10K contributors and HHMI. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
AccessionPRJNA562166
TypeUmbrella project
OrganismAcanthisitta chloris[Taxonomy ID: 57068]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta; Acanthisitta chloris
SubmissionRegistration date: 26-Aug-2019
Vertebrate Genomes Project
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)41
WGS master2
SRA Experiments17
Other datasets
BioSample2
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases246
Data volume, Mbytes85947
This project encompasses the following 2 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
Total

1
1
2
BioProject
accession
Assembly
level
OrganismTitle
PRJNA561954 ChromosomesAcanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1, primary haplotype (Vertebrate Genomes Project)
PRJNA561955 ScaffoldsAcanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1, alternate haplotype (Vertebrate Genomes Project)

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