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Accession: PRJNA526057 ID: 526057

Shewanella

Shewanella Genome sequencing and assembly

See Genome Information for Shewanella algae
Comparative genomics of Shewanella algae isolates
AccessionPRJNA526057
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismShewanella[Taxonomy ID: 22]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella
Publications (total 3)
  • Martín-Rodríguez AJ et al., "Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments.", Int J Syst Evol Microbiol, 2023 Apr;73(4)
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SubmissionRegistration date: 18-Oct-2019
Karolinska Institutet
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)90
WGS master85
Genomic DNA5
SRA Experiments1
Protein Sequences21104
Publications
PubMed3
PMC2
Other datasets
BioSample90
Assembly90
Supplementary data
Base modification2
Assembly details:
Assembly levelNumber of Assemblies
5
1
84
90
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_023283745.1ContigJAKILH000000000
SAMN24537881
KCTC 22492
GCA_023284025.1ContigJAKIKR000000000
SAMN24537865
DSM 17171
GCA_023283685.1ContigJAKILK000000000
SAMN24537885
JCM 17801
GCA_023283525.1ContigJAKILW000000000
SAMN24537897
254-1
GCA_017570325.1Complete genomeSAMN16670464
150735
GCA_017570225.1Complete genomeSAMN16670468
G1
GCA_017570125.1Complete genomeSAMN16670438
A59
GCA_017570045.1Complete genomeSAMN16670445
A291
GCA_017580145.1ContigJADZGW000000000
SAMN16670442
A93
GCA_017580125.1ContigJADZGX000000000
SAMN16670441
A65
GCA_017580105.1ContigJADZGV000000000
SAMN16670443
A94
GCA_017580095.1ContigJADZGY000000000
SAMN16670439
A60
GCA_017580085.1ContigJADZGU000000000
SAMN16670444
A97
GCA_017580205.1ContigJADZGZ000000000
SAMN16670437
A58
GCA_017580185.1ContigJADZHA000000000
SAMN16670436
A57
GCA_017580295.1ContigJADZHF000000000
SAMN16670475
950570
GCA_017580285.1ContigJADZHE000000000
SAMN16670462
6F5
GCA_017580225.1ContigJADZHC000000000
SAMN16670440
A41
GCA_017580235.1ContigJADZHD000000000
SAMN16670446
A292
GCA_017580215.1ContigJADZHB000000000
SAMN16670435
A56
GCA_017580345.1ContigJADZHI000000000
SAMN16670466
159418
GCA_017580335.1ScaffoldJADZHH000000000
SAMN16670470
590722
GCA_017580325.1ContigJADZHG000000000
SAMN16670469
669801
GCA_017580505.1ContigJADZHP000000000
SAMN16670449
CCUG-48086
GCA_017580485.1ContigJADZHQ000000000
SAMN16670450
CCUG-38646
GCA_017580455.1ContigJADZHN000000000
SAMN16670457
CCUG-56496
GCA_017580425.1ContigJADZHL000000000
SAMN16670447
CCUG-72638
GCA_017580415.1ContigJADZHK000000000
SAMN16670456
CCUG-72678
GCA_017580395.1ContigJADZHJ000000000
SAMN16670465
97087
GCA_017580385.1ContigJADZHM000000000
SAMN16670459
CCUG-58400
GCA_017580525.1ContigJADZHS000000000
SAMN16670451
CCUG-24987
GCA_017580535.1ContigJADZHO000000000
SAMN16670448
CCUG-50501
GCA_017580565.1ContigJADZHR000000000
SAMN16670463
28011
GCA_017580665.1ContigJADZHV000000000
SAMN16670454
CCUG-12945
GCA_017580595.1ContigJADZHT000000000
SAMN16670452
CCUG-20533
GCA_017580635.1ContigJADZHW000000000
SAMN16670467
5043
GCA_017580585.1ContigJADZHU000000000
SAMN16670453
CCUG-15259
GCA_017580715.1ContigJADZHZ000000000
SAMN16670460
404
GCA_017580705.1ContigJADZHX000000000
SAMN16670458
CCUG-789
GCA_017580685.1ContigJADZHY000000000
SAMN16670455
CCUG-526
GCA_009183365.2Complete genomeSAMN11083189
CECT-5071
GCA_017580065.1ContigJADZGS000000000
SAMN16670471
HUD-G3
GCA_017580025.1ContigJADZGP000000000
SAMN16670461
SF7
GCA_017580015.1ContigJADZGR000000000
SAMN16670473
HUD-H4
GCA_017580005.1ContigJADZGQ000000000
SAMN16670474
HUD-I2
GCA_017579985.1ContigJADZGT000000000
SAMN16670472
HUD-D8
GCA_023283725.1ContigJAKILJ000000000
SAMN24537883
DSM 23803
GCA_023349185.1ContigJAKIKY000000000
SAMN24537872
JCM 12193
GCA_023283885.1ContigJAKILA000000000
SAMN24537874
KCTC 22121
GCA_023284085.1ContigJAKVHY000000000
SAMN24537884
DSM 8812
GCA_023283475.1ContigJAKILV000000000
SAMN24537896
CCUG 57101
GCA_023283465.1ContigJAKILX000000000
SAMN24537898
A49
GCA_023349125.1ContigJAKIKT000000000
SAMN24537867
DSM 21332
GCA_023283565.1ContigJAKILQ000000000
SAMN24537891
CCUG 58667
GCA_023283985.1ContigJAKIKU000000000
SAMN24537868
DSM 24955
GCA_023349145.1ContigJAKILP000000000
SAMN24537890
CCUG 57102
GCA_023284065.1ContigJAKIKP000000000
SAMN24537863
DSM 16422
GCA_023283645.1ContigJAKILL000000000
SAMN24537886
KCTC 42663
GCA_023283945.1ContigJAKIKW000000000
SAMN24537870
ATCC 700752
GCA_023283485.1ContigJAKILU000000000
SAMN24537895
LMG 23744
GCA_023283585.1ContigJAKILO000000000
SAMN24537889
KCTC 22180
GCA_025370255.1ContigJAMTCD000000000
SAMN28933879
SP1S2-7
GCA_023283595.1ContigJAKILS000000000
SAMN24537893
KCTC 42807
GCA_023284045.1ContigJAKIKQ000000000
SAMN24537864
DSM 17170
GCA_023349165.1ContigJAKILR000000000
SAMN24537892
CCUG 62411
GCA_023283845.1ContigJAKILC000000000
SAMN24537876
LMG 21403
GCA_023283925.1ContigJAKIKX000000000
SAMN24537871
JCM 12192
GCA_023283825.1ContigJAKILD000000000
SAMN24537877
LMG 21437
GCA_023283895.1ContigJAKILB000000000
SAMN24537875
KCTC 23973
GCA_023283765.1ContigJAKILG000000000
SAMN24537880
DSM 15900
GCA_023283865.1ContigJAKIKZ000000000
SAMN24537873
JCM 32090
GCA_023283535.1ContigJAKILT000000000
SAMN24537894
LMG 21408
GCA_023283695.1ContigJAKILM000000000
SAMN24537887
KCTC 62131
GCA_031932065.1ContigJAUOES000000000
SAMN36536651
SP2S1-2
GCA_039024115.1ContigJBCHKS000000000
SAMN41021390
VAX-SP4-0CM-4
GCA_039024095.1ContigJBCHKR000000000
SAMN41021391
VAX-SP4-0CM-7
GCA_023283605.1ContigJAKILN000000000
SAMN24537888
LMG 21406
GCA_023283775.1ContigJAKILE000000000
SAMN24537878
CCUG 60900
GCA_025370265.1ContigJAMTCC000000000
SAMN28933880
SP1W3
GCA_031932105.1ContigJAUOEU000000000
SAMN36536649
SP1S1-7
GCA_031932075.1ContigJAUOET000000000
SAMN36536650
SP1S2-4
GCA_031932025.1ContigJAUOER000000000
SAMN36536652
SP2S2-4
GCA_031931965.1ContigJAUOEQ000000000
SAMN36536653
SP2S2-6
GCA_023283805.1ContigJAKILF000000000
SAMN24537879
CCUG 71370
GCA_023284005.1ContigJAKIKS000000000
SAMN24537866
DSM 17177
GCA_023283965.1ContigJAKIKV000000000
SAMN24537869
KCTC 62130
GCA_031932135.1ContigJAUOEV000000000
SAMN36536648
SP1S1-4
GCA_039024175.1ContigJBCHKU000000000
SAMN41021388
VAX-SP0-0CM-1
GCA_039024155.1ContigJBCHKT000000000
SAMN41021389
VAX-SP0-4CM-4
GCA_023283665.1ContigJAKILI000000000
SAMN24537882
DSM 22215
SRA Data Details
ParameterValue
Data volume, Gbases3
Data volume, Mbytes772

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    Shewanella Genome sequencing and assembly
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