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Accession: PRJNA521409 ID: 521409

Salmonella enterica subsp. enterica

Antibiotic Resistance and diversity of Salmonella enterica Serovars Asscoaited with Brolier Chickens. Genome sequencing and assembly

In this study we sequenced and assembled Salmonella genomes encompassing 7 serotypes isolated from poultry farms in Canada between 2005 and 2008 to achive the following objectives:

1- the development of machine learning method for predicting AST from genomic datasets

2- Development of simple PCR based AMR gene detection methods

AccessionPRJNA521409
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 7-Feb-2019
- Agriculture and Agri-Food Canada
- Dr. Moussa Diarra, GRDC,cAAFC, Guelph ON Canada
Related Resources
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3674
WGS master99
Protein Sequences451719
Other datasets
BioSample99
Assembly99
Assembly details:
Assembly levelNumber of Assemblies
2
97
99
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_004298875.1ContigSIIP00000000SAMN10887026
1762
GCA_004298865.1ContigSIIX00000000SAMN10887002
3180
GCA_004298845.1ContigSIIN00000000SAMN10887032
1771
GCA_004298825.1ContigSIIF00000000SAMN10887064
3315
GCA_004298765.1ContigSIIG00000000SAMN10887062
3311
GCA_004298775.1ContigSIID00000000SAMN10887071
3344
GCA_004298785.1ContigSIII00000000SAMN10887056
3321
GCA_004298515.1ContigSIIK00000000SAMN10887039
3342
GCA_004298285.1ContigSIIQ00000000SAMN10887024
3353
GCA_004298265.1ContigSIIM00000000SAMN10887034
1773
GCA_004298205.1ContigSIHZ00000000SAMN10887087
3128
GCA_004298225.1ContigSIIC00000000SAMN10887076
3160
GCA_004298195.1ContigSIIA00000000SAMN10887081
3198
GCA_004298185.1ContigSIIB00000000SAMN10887079
3151
GCA_004299045.1ContigSIIH00000000SAMN10887059
3305
GCA_004299115.1ContigSIIV00000000SAMN10887012
3139
GCA_004299165.1ContigSIIU00000000SAMN10887014
3146
GCA_004299175.1ContigSIIL00000000SAMN10887035
1775
GCA_004299345.1ContigSIIR00000000SAMN10887022
3200
GCA_004299405.1ContigSIIO00000000SAMN10887030
1769
GCA_004299585.1ContigSIIS00000000SAMN10887019
3186
GCA_004299325.1ContigSIIT00000000SAMN10887015
3147
GCA_004299715.1ContigSIIE00000000SAMN10887068
3326
GCA_004299605.1ContigSIIZ00000000SAMN10887000
3167
GCA_004308255.1ContigSIDI00000000SAMN10887093
1892
GCA_004309635.1ContigSIFU00000000SAMN10886999
2005
GCA_004309605.1ContigSIFH00000000SAMN10887021
3197
GCA_004309575.1ContigSIFW00000000SAMN10886997
1797
GCA_004309565.1ContigSIFG00000000SAMN10887023
3352
GCA_004309615.1ContigSIFI00000000SAMN10887020
3191
GCA_004309535.1ContigSIFF00000000SAMN10887025
1760
GCA_004309505.1ContigSIFE00000000SAMN10887029
1768
GCA_004309525.1ContigSIFV00000000SAMN10886998
2003
GCA_004309475.1ContigSIFD00000000SAMN10887031
1770
GCA_004309445.1ContigSIFQ00000000SAMN10887007
3125
GCA_004309455.1ContigSIFN00000000SAMN10887011
3138
GCA_004309345.1ContigSIFB00000000SAMN10887036
3140
GCA_004309405.1ContigSIFJ00000000SAMN10887018
3158
GCA_004309375.1ContigSIWY00000000SAMN10887003
3181
GCA_004309305.1ContigSIFM00000000SAMN10887013
3142
GCA_004309295.1ContigSIFS00000000SAMN10887005
3346
GCA_004309415.1ContigSIFC00000000SAMN10887033
1772
GCA_004309265.1ContigSIEY00000000SAMN10887040
1758
GCA_004309285.1ContigSIEZ00000000SAMN10887038
3332
GCA_004309245.1ContigSIFK00000000SAMN10887017
3156
GCA_004309185.1ContigSIEV00000000SAMN10887043
3126
GCA_004309195.1ContigSIEX00000000SAMN10887041
1778
GCA_004309205.1ContigSIFT00000000SAMN10887004
3303
GCA_004309145.1ContigSIEW00000000SAMN10887042
1783
GCA_004309125.1ContigSIEQ00000000SAMN10887048
3179
GCA_004309075.1ContigSIEJ00000000SAMN10887057
3322
GCA_004309095.1ContigSIFL00000000SAMN10887016
3149
GCA_004309165.1ContigSIEU00000000SAMN10887044
3132
GCA_004309045.1ContigSIEI00000000SAMN10887058
3302
GCA_004309055.1ContigSIEP00000000SAMN10887049
3184
GCA_004308875.1ContigSIEO00000000SAMN10887050
3313
GCA_004308985.1ContigSIES00000000SAMN10887046
3144
GCA_004308885.1ContigSIFA00000000SAMN10887037
3168
GCA_004309005.1ContigSIFR00000000SAMN10887006
3348
GCA_004308925.1ContigSIEM00000000SAMN10887052
3318
GCA_004308945.1ContigSIEH00000000SAMN10887060
3306
GCA_004308995.1ContigSIEN00000000SAMN10887051
3351
GCA_004308955.1ContigSIET00000000SAMN10887045
3134
GCA_004308865.1ContigSIER00000000SAMN10887047
3145
GCA_004308695.1ContigSIEB00000000SAMN10887069
3339
GCA_004308845.1ContigSIFP00000000SAMN10887008
3133
GCA_004308755.1ContigSIEK00000000SAMN10887054
3336
GCA_004308785.1ContigSIEE00000000SAMN10887065
3317
GCA_004308725.1ContigSIED00000000SAMN10887066
3323
GCA_004308825.1ContigSIEG00000000SAMN10887061
3310
GCA_004308745.1ContigSIFO00000000SAMN10887009
3135
GCA_004308795.1ContigSIEF00000000SAMN10887063
3314
GCA_004308685.1ContigSIEA00000000SAMN10887070
3341
GCA_004308645.1ContigSIDV00000000SAMN10887077
3162
GCA_004308625.1ContigSIDS00000000SAMN10887082
3199
GCA_004308635.1ContigSIDU00000000SAMN10887078
3163
GCA_004308595.1ContigSIDT00000000SAMN10887080
3333
GCA_004308585.1ContigSIDR00000000SAMN10887083
1792
GCA_004308545.1ContigSIDQ00000000SAMN10887084
1803
GCA_004308555.1ContigSIDP00000000SAMN10887085
1888
GCA_004308485.1ContigSIDN00000000SAMN10887088
1811
GCA_004308505.1ContigSIEC00000000SAMN10887067
3324
GCA_004308395.1ContigSIDM00000000SAMN10887089
3143
GCA_004308415.1ContigSIDY00000000SAMN10887073
1793
GCA_004308495.1ContigSIDX00000000SAMN10887074
3166
GCA_004308465.1ContigSIDO00000000SAMN10887086
1893
GCA_004308435.1ContigSIDK00000000SAMN10887091
1890
GCA_004308355.1ContigSIDG00000000SAMN10887095
3193
GCA_004308385.1ContigSIDW00000000SAMN10887075
3171
GCA_004308305.1ContigSIEL00000000SAMN10887053
3337
GCA_004308335.1ContigSIDL00000000SAMN10887090
3176
GCA_004308285.1ContigSIDJ00000000SAMN10887092
1891
GCA_004308295.1ContigSIDH00000000SAMN10887094
3338
GCA_004308215.1ContigSIDZ00000000SAMN10887072
3349
GCA_004321645.1ContigSIIY00000000SAMN10887001
3169
GCA_004321635.1ContigSIIW00000000SAMN10887010
3137
GCA_004321615.1ContigSIIJ00000000SAMN10887055
3319
GCA_004322695.1ScaffoldSIZY00000000SAMN10887027
1766
GCA_004322675.1ScaffoldSIZX00000000SAMN10887028
1767

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    Salmonella enterica subsp. enterica
    Antibiotic Resistance and diversity of Salmonella enterica Serovars Asscoaited with Brolier Chickens. Genome sequencing and assembly
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