ID 509690 - BioProject

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Accession: PRJNA509690 ID: 509690

Genomic analysis of porcine faecal commensal E. coli from sows and their offspring

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This project is a component of the Genome submissions of the Ausgem initiative

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15 additional projects are components of the Genome submissions of the Ausgem initiative.

This genomic epidemiological study aims to characterise commensal E. coli sourced from faeces of healthy post-weaned piglets and their mothers as a potential reservoir of antimicrobial resistance and virulence plasmids, and assess their potential as humans pathogens

Accession	PRJNA509690
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 12-Dec-2018 The ithree institute
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	29053
WGS master	117
SRA Experiments	117
Other datasets
BioSample	117
Assembly	117

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

18
99
117

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004171215.1	SAFP00000000	SAMN10587048	TZ33_1P	Escherichia coli
GCA_004171205.1	SAFO00000000	SAMN10587049	TZ33_2P	Escherichia coli
GCA_004171175.1	SAFN00000000	SAMN10587050	TZ33_4P	Escherichia coli
GCA_004171165.1	SAFL00000000	SAMN10587052	TZ33_4Pb	Escherichia coli
GCA_004171115.1	SAFJ00000000	SAMN10587054	TZ34_S	Escherichia coli
GCA_004171055.1	SAEZ00000000	SAMN10587064	TZ38_1P	Escherichia coli
GCA_004171135.1	SAFK00000000	SAMN10587053	TZ33_5P	Escherichia coli
GCA_004171085.1	SAFA00000000	SAMN10587063	TZ38_S	Escherichia coli
GCA_004171075.1	SAFF00000000	SAMN10587058	TZ36_S	Escherichia coli
GCA_004171045.1	SAEV00000000	SAMN10587068	TZ40_2P	Escherichia coli
GCA_004171005.1	SAEU00000000	SAMN10587069	TZ41_S	Escherichia coli
GCA_004170995.1	SAET00000000	SAMN10587070	TZ41_1P	Escherichia coli
GCA_004170975.1	SAEQ00000000	SAMN10587073	TZ42_2P	Escherichia coli
GCA_004170965.1	SAEO00000000	SAMN10587075	TZ43_1P	Escherichia coli
GCA_004170925.1	SAEL00000000	SAMN10587078	TZ44_2P	Escherichia coli
GCA_004170915.1	SAEJ00000000	SAMN10587080	TZ45_1P	Escherichia coli
GCA_004170905.1	SAEF00000000	SAMN10587084	TZ_132P	Escherichia coli
GCA_004170875.1	SAFI00000000	SAMN10587055	TZ34_1P	Escherichia coli
GCA_004170865.1	SAEE00000000	SAMN10587085	TZ_58P	Escherichia coli
GCA_004170795.1	SAFE00000000	SAMN10587059	TZ37_S	Escherichia coli
GCA_004170805.1	SAFH00000000	SAMN10587056	TZ34_2P	Escherichia coli
GCA_004170785.1	SAFG00000000	SAMN10587057	TZ35_S	Escherichia coli
GCA_004170765.1	SAFC00000000	SAMN10587061	TZ37_1P	Escherichia coli
GCA_004170775.1	SAFD00000000	SAMN10587060	TZ37_Sa	Escherichia coli
GCA_004170695.1	SAEY00000000	SAMN10587065	TZ39_S	Escherichia coli
GCA_004170705.1	SAFB00000000	SAMN10587062	TZ37_2P	Escherichia coli
GCA_004170675.1	SAES00000000	SAMN10587071	TZ42_S	Escherichia coli
GCA_004170685.1	SAEX00000000	SAMN10587066	TZ40_S	Escherichia coli
GCA_004170665.1	SAEW00000000	SAMN10587067	TZ40_1P	Escherichia coli
GCA_004170625.1	SAER00000000	SAMN10587072	TZ42_1P	Escherichia coli
GCA_004170585.1	SAEN00000000	SAMN10587076	TZ44_S	Escherichia coli
GCA_004170595.1	SAEP00000000	SAMN10587074	TZ43_S	Escherichia coli
GCA_004170565.1	SAEM00000000	SAMN10587077	TZ44_1P	Escherichia coli
GCA_004170575.1	SAEK00000000	SAMN10587079	TZ45_S	Escherichia coli
GCA_004170505.1	SAEI00000000	SAMN10587081	TZ45_2P	Escherichia coli
GCA_004170475.1	SAED00000000	SAMN10587086	TZ_109P	Escherichia coli
GCA_004170495.1	SAEH00000000	SAMN10587082	TZ45_3P	Escherichia coli
GCA_004170485.1	SAEG00000000	SAMN10587083	TZ_131P	Escherichia coli
GCA_004170465.1	SAEC00000000	SAMN10587087	TZ_81P	Escherichia coli
GCA_004172795.1	SAIL00000000	SAMN10586974	TZ4_1P	Escherichia coli
GCA_004172805.1	SAIN00000000	SAMN10586972	TZ2_1P	Escherichia coli
GCA_004172765.1	SAII00000000	SAMN10586977	TZ4_4P	Escherichia coli
GCA_004172755.1	SAIH00000000	SAMN10586978	TZ4_4Pa	Escherichia coli
GCA_004172745.1	SAIC00000000	SAMN10586983	TZ6_3P	Escherichia coli
GCA_004172725.1	SAHZ00000000	SAMN10586986	TZ10_1P	Escherichia coli
GCA_004172675.1	SAHW00000000	SAMN10586989	TZ11_1Pb	Escherichia coli
GCA_004172645.1	SAHS00000000	SAMN10586993	TZ13_S	Escherichia coli
GCA_004172665.1	SAHT00000000	SAMN10586992	TZ12_1P	Escherichia coli
GCA_004172655.1	SAHP00000000	SAMN10586996	TZ13_3P	Escherichia coli
GCA_004172615.1	SAHO00000000	SAMN10586997	TZ14_1P	Escherichia coli
GCA_004172555.1	SAHK00000000	SAMN10587001	TZ17_S	Escherichia coli
GCA_004172575.1	SAHJ00000000	SAMN10587002	TZ17_1P	Escherichia coli
GCA_004172565.1	SAHH00000000	SAMN10587004	TZ17_4P	Escherichia coli
GCA_004172545.1	SAHG00000000	SAMN10587005	TZ17_4Pa	Escherichia coli
GCA_004172475.1	SAHA00000000	SAMN10587011	TZ19_S	Escherichia coli
GCA_004172525.1	SAHE00000000	SAMN10587007	TZ18_S	Escherichia coli
GCA_004172465.1	SAGU00000000	SAMN10587017	TZ21_2P	Escherichia coli
GCA_004172455.1	SAGZ00000000	SAMN10587012	TZ20_S	Escherichia coli
GCA_004172445.1	SAGX00000000	SAMN10587014	TZ20_2P	Escherichia coli
GCA_004172425.1	SAGS00000000	SAMN10587019	TZ24_3Pa	Escherichia coli
GCA_004172385.1	SAGR00000000	SAMN10587020	TZ25_S	Escherichia coli
GCA_004172355.1	SAGL00000000	SAMN10587026	TZ27_S	Escherichia coli
GCA_004172365.1	SAGN00000000	SAMN10587024	TZ26_2P	Escherichia coli
GCA_004172335.1	SAGM00000000	SAMN10587025	TZ26_3P	Escherichia coli
GCA_004172325.1	SAGG00000000	SAMN10587031	TZ30_2P	Escherichia coli
GCA_004172305.1	SAGE00000000	SAMN10587033	TZ30_4P	Escherichia coli
GCA_004172265.1	SAGB00000000	SAMN10587036	TZ31_1P	Escherichia coli
GCA_004172245.1	SAFS00000000	SAMN10587045	TZ32_7Pa	Escherichia coli
GCA_004172255.1	SAFX00000000	SAMN10587040	TZ32_3P	Escherichia coli
GCA_004172205.1	SAFM00000000	SAMN10587051	TZ33_4Pa	Escherichia coli
GCA_004172215.1	SAFR00000000	SAMN10587046	TZ32_7Pb	Escherichia coli
GCA_004172175.1	SAIO00000000	SAMN10586971	TZ2_S	Escherichia coli
GCA_004172155.1	SAIM00000000	SAMN10586973	TZ2_2P	Escherichia coli
GCA_004172145.1	SAIK00000000	SAMN10586975	TZ4_2P	Escherichia coli
GCA_004172085.1	SAIF00000000	SAMN10586980	TZ5_S	Escherichia coli
GCA_004172115.1	SAIJ00000000	SAMN10586976	TZ4_3P	Escherichia coli
GCA_004172065.1	SAIG00000000	SAMN10586979	TZ4_5P	Escherichia coli
GCA_004172055.1	SAIE00000000	SAMN10586981	TZ6_1P	Escherichia coli
GCA_004172045.1	SAID00000000	SAMN10586982	TZ6_2P	Escherichia coli
GCA_004172015.1	SAIB00000000	SAMN10586984	TZ7_Sa	Escherichia coli
GCA_004172005.1	SAIA00000000	SAMN10586985	TZ7_Sb	Escherichia coli
GCA_004171975.1	SAHY00000000	SAMN10586987	TZ11_S	Escherichia coli
GCA_004171955.1	SAHX00000000	SAMN10586988	TZ11_1P	Escherichia coli
GCA_004171945.1	SAHV00000000	SAMN10586990	TZ11_2P	Escherichia coli
GCA_004171925.1	SAHU00000000	SAMN10586991	TZ12_S	Escherichia coli
GCA_004171885.1	SAHR00000000	SAMN10586994	TZ13_1P	Escherichia coli
GCA_004171875.1	SAHQ00000000	SAMN10586995	TZ13_2P	Escherichia coli
GCA_004171865.1	SAHN00000000	SAMN10586998	TZ14_2P	Escherichia coli
GCA_004171815.1	SAHM00000000	SAMN10586999	TZ14_4P	Escherichia coli
GCA_004171825.1	SAHL00000000	SAMN10587000	TZ15_1P	Escherichia coli
GCA_004171795.1	SAHI00000000	SAMN10587003	TZ17_2P	Escherichia coli
GCA_004171775.1	SAHD00000000	SAMN10587008	TZ18_2P	Escherichia coli
GCA_004171765.1	SAHF00000000	SAMN10587006	TZ17_4Pb	Escherichia coli
GCA_004171725.1	SAHC00000000	SAMN10587009	TZ18_3P	Escherichia coli
GCA_004171715.1	SAHB00000000	SAMN10587010	TZ18_4P	Escherichia coli
GCA_004171705.1	SAGY00000000	SAMN10587013	TZ20_1P	Escherichia coli
GCA_004171675.1	SAGW00000000	SAMN10587015	TZ21_S	Escherichia coli
GCA_004171665.1	SAGV00000000	SAMN10587016	TZ21_1P	Escherichia coli
GCA_004171615.1	SAGP00000000	SAMN10587022	TZ26_S	Escherichia coli
GCA_004171625.1	SAGT00000000	SAMN10587018	TZ24_1P	Escherichia coli
GCA_004171605.1	SAGQ00000000	SAMN10587021	TZ25_1P	Escherichia coli
GCA_004171565.1	SAGK00000000	SAMN10587027	TZ27_1P	Escherichia coli
GCA_004171555.1	SAGO00000000	SAMN10587023	TZ26_1P	Escherichia coli
GCA_004171545.1	SAGJ00000000	SAMN10587028	TZ27_3P	Escherichia coli
GCA_004171505.1	SAGH00000000	SAMN10587030	TZ30_1P	Escherichia coli
GCA_004171515.1	SAGI00000000	SAMN10587029	TZ30_S	Escherichia coli
GCA_004171455.1	SAGF00000000	SAMN10587032	TZ30_3P	Escherichia coli
GCA_004171435.1	SAGD00000000	SAMN10587034	TZ30_5P	Escherichia coli
GCA_004171415.1	SAFZ00000000	SAMN10587038	TZ32_1P	Escherichia coli
GCA_004171425.1	SAGC00000000	SAMN10587035	TZ31_S	Escherichia coli
GCA_004171405.1	SAGA00000000	SAMN10587037	TZ32_S	Escherichia coli
GCA_004171315.1	SAFT00000000	SAMN10587044	TZ32_7P	Escherichia coli
GCA_004171355.1	SAFY00000000	SAMN10587039	TZ32_2P	Escherichia coli
GCA_004171335.1	SAFW00000000	SAMN10587041	TZ32_4P	Escherichia coli
GCA_004171305.1	SAFU00000000	SAMN10587043	TZ32_6P	Escherichia coli
GCA_004171325.1	SAFV00000000	SAMN10587042	TZ32_5P	Escherichia coli
GCA_004171235.1	SAFQ00000000	SAMN10587047	TZ33_S	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	16636

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Genomic analysis of porcine faecal commensal E. coli from sows and their offspring

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