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Accession: PRJNA433074 ID: 433074

Staphylococcus aureus

Staphylococcus aureus along the pork production chain and in the community in China

See Genome Information for Staphylococcus aureus
Whole genome sequenced Staphylococcus aureus isolates derived from the pork production chain, operation workers, the environment and surrounding community residents in Shandong, China.
AccessionPRJNA433074
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismStaphylococcus aureus[Taxonomy ID: 1280]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus
Grants
  • "The National Natural Science Foundation of China" (Grant ID 31422055, The National Natural Science Foundation of China)
  • "The National Natural Science Foundation of China" (Grant ID 31472237, The National Natural Science Foundation of China)
  • "The National Natural Science Foundation of China" (Grant ID 31761133022, The National Natural Science Foundation of China)
  • "The National Natural Science Foundation of China" (Grant ID 8136113802, The National Natural Science Foundation of China)
  • "Swedish Research Council" (Grant ID D0879801, Swedish Research Council)
SubmissionRegistration date: 10-Jul-2018
China Agricultural University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8620
WGS master128
Other datasets
BioSample128
Assembly128
Assembly details:
Assembly levelNumber of Assemblies
126
2
128
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003311605.1ScaffoldPTEL00000000SAMN08470298
1AF007
GCA_003311585.1ScaffoldPTDY00000000SAMN08470311
2AY41
GCA_003311575.1ScaffoldPTDV00000000SAMN08470314
2AY60
GCA_003311545.1ScaffoldPTDU00000000SAMN08470315
2AY63
GCA_003311455.1ScaffoldPTEN00000000SAMN08470296
1AB002
GCA_003311525.1ScaffoldPTDT00000000SAMN08470316
2AY68-1
GCA_003311515.1ScaffoldPTDS00000000SAMN08470317
2AY7-1
GCA_003311465.1ScaffoldPTDJ00000000SAMN08470326
2CY2
GCA_003311475.1ScaffoldPTDK00000000SAMN08470325
2CY19
GCA_003311425.1ScaffoldPTEM00000000SAMN08470297
1AB046
GCA_003311395.1ScaffoldPTEK00000000SAMN08470299
1AK045
GCA_003311405.1ScaffoldPTEJ00000000SAMN08470300
2AB-3
GCA_003311375.1ScaffoldPTEI00000000SAMN08470301
2AB3-2
GCA_003311335.1ScaffoldPTEG00000000SAMN08470303
2AB5-1
GCA_003311345.1ScaffoldPTEH00000000SAMN08470302
2AB4-1
GCA_003311315.1ScaffoldPTEF00000000SAMN08470304
2AB6-1
GCA_003311275.1ScaffoldPTEE00000000SAMN08470305
2AB7-1
GCA_003311265.1ScaffoldPTED00000000SAMN08470306
2AY16-1
GCA_003311245.1ScaffoldPTEC00000000SAMN08470307
2AY19
GCA_003311215.1ScaffoldPTEB00000000SAMN08470308
2AY20
GCA_003311205.1ScaffoldPTEA00000000SAMN08470309
2AY27
GCA_003311175.1ScaffoldPTDZ00000000SAMN08470310
2AY36
GCA_003311165.1ScaffoldPTDX00000000SAMN08470312
2AY47
GCA_003311145.1ScaffoldPTDW00000000SAMN08470313
2AY54
GCA_003311115.1ScaffoldPTDR00000000SAMN08470318
2AY72
GCA_003311105.1ScaffoldPTDQ00000000SAMN08470319
2AY74
GCA_003311085.1ScaffoldPTDP00000000SAMN08470320
2AY76
GCA_003311055.1ScaffoldPTDO00000000SAMN08470321
2AY77
GCA_003311045.1ScaffoldPTDN00000000SAMN08470322
2B1-1
GCA_003311025.1ScaffoldPTDM00000000SAMN08470323
2CY12
GCA_003311005.1ScaffoldPTDL00000000SAMN08470324
2CY17
GCA_003310985.1ScaffoldPTDI00000000SAMN08470327
2CY20-1
GCA_003310965.1ScaffoldPTDD00000000SAMN08470331
AB4
GCA_003310925.1ScaffoldPTCZ00000000SAMN08470336
AF012
GCA_003310935.1ScaffoldPTDB00000000SAMN08470334
AD016
GCA_003310905.1ScaffoldPTCY00000000SAMN08470337
AG037
GCA_003310885.1ScaffoldPTCX00000000SAMN08470338
AH018
GCA_003310865.1ScaffoldPTCW00000000SAMN08470339
AH022
GCA_003310835.1ScaffoldPTCV00000000SAMN08470340
AH027
GCA_003310825.1ScaffoldPTCU00000000SAMN08470341
AK017
GCA_003310805.1ScaffoldPTCR00000000SAMN08470344
AL048
GCA_003310765.1ScaffoldPTCJ00000000SAMN08470352
BY46-2
GCA_003310775.1ScaffoldPTCQ00000000SAMN08470345
AR1
GCA_003310745.1ScaffoldPTCH00000000SAMN08470354
BY49-2
GCA_003310715.1ScaffoldPTCF00000000SAMN08470356
BY53
GCA_003310705.1ScaffoldPTCA00000000SAMN08470361
BY65
GCA_003310625.1ScaffoldPTBT00000000SAMN08470368
BY80
GCA_003310685.1ScaffoldPTBZ00000000SAMN08470362
BY68
GCA_003310645.1ScaffoldPTBY00000000SAMN08470363
BY69
GCA_003310635.1ScaffoldPTBU00000000SAMN08470367
BY78
GCA_003310585.1ScaffoldPTBS00000000SAMN08470369
BY82
GCA_003310565.1ScaffoldPTBN00000000SAMN08470374
DY32
GCA_003310575.1ScaffoldPTBR00000000SAMN08470370
BY89
GCA_003310515.1ScaffoldPTDH00000000SAMN08470328
2CY3
GCA_003310525.1ScaffoldPTBL00000000SAMN08470376
DY82
GCA_003310505.1ScaffoldPTDG00000000SAMN08470329
2CY4
GCA_003310455.1ContigPTDE00000000SAMN08470332
AC045
GCA_003310465.1ScaffoldPTDF00000000SAMN08470330
2CY8
GCA_003310445.1ScaffoldPTDC00000000SAMN08470333
AD010
GCA_003310415.1ScaffoldPTDA00000000SAMN08470335
AD057
GCA_003310395.1ScaffoldPTCT00000000SAMN08470342
AK046
GCA_003310385.1ContigPTCS00000000SAMN08470343
AL008
GCA_003310325.1ScaffoldPTCN00000000SAMN08470348
AR49-1
GCA_003310345.1ScaffoldPTCP00000000SAMN08470346
AR2-1
GCA_003310335.1ScaffoldPTCO00000000SAMN08470347
AR3
GCA_003310305.1ScaffoldPTCM00000000SAMN08470349
AY20
GCA_003310275.1ScaffoldPTCL00000000SAMN08470350
AY53
GCA_003310265.1ScaffoldPTCK00000000SAMN08470351
BY2
GCA_003310235.1ScaffoldPTCI00000000SAMN08470353
BY48-1
GCA_003310215.1ScaffoldPTCG00000000SAMN08470355
BY51
GCA_003310205.1ScaffoldPTCE00000000SAMN08470357
BY54
GCA_003310175.1ScaffoldPTCD00000000SAMN08470358
BY55-1
GCA_003310155.1ScaffoldPTCC00000000SAMN08470359
BY56-1
GCA_003310145.1ScaffoldPTCB00000000SAMN08470360
BY59-1
GCA_003310115.1ScaffoldPTBX00000000SAMN08470364
BY7
GCA_003310105.1ScaffoldPTBW00000000SAMN08470365
BY73
GCA_003310085.1ScaffoldPTBV00000000SAMN08470366
BY74
GCA_003310055.1ScaffoldPTBQ00000000SAMN08470371
CY14
GCA_003310045.1ScaffoldPTBP00000000SAMN08470372
CY21-2
GCA_003310025.1ScaffoldPTBO00000000SAMN08470373
DY22
GCA_003309975.1ScaffoldPTBK00000000SAMN08470377
EP1
GCA_003309985.1ScaffoldPTBM00000000SAMN08470375
DY67-1
GCA_003309965.1ScaffoldPTBE00000000SAMN08470383
S1AH011
GCA_003309935.1ScaffoldPTAW00000000SAMN08470391
S1AK033
GCA_003309745.1ScaffoldPUHM00000000SAMN08470417
YF012
GCA_003309925.1ScaffoldPTAV00000000SAMN08470392
S1D049
GCA_003309905.1ScaffoldPTAL00000000SAMN08470402
SAY42
GCA_003309885.1ScaffoldPTAK00000000SAMN08470403
SDY10
GCA_003309865.1ScaffoldPTAI00000000SAMN08470405
SDY30
GCA_003309845.1ScaffoldPTAH00000000SAMN08470406
SDY38-1
GCA_003309805.1ScaffoldPSZY00000000SAMN08470415
SJY5
GCA_003309815.1ScaffoldPTAD00000000SAMN08470410
SEY16-1
GCA_003309755.1ScaffoldPSZX00000000SAMN08470416
SKY9-1
GCA_003309765.1ScaffoldPTBJ00000000SAMN08470378
FE4-1
GCA_003309715.1ScaffoldPTBI00000000SAMN08470379
S1AA062
GCA_003309705.1ScaffoldPTBH00000000SAMN08470380
S1AD014
GCA_003309655.1ScaffoldPTBF00000000SAMN08470382
S1AG056
GCA_003309665.1ScaffoldPTBG00000000SAMN08470381
S1AF032
GCA_003309645.1ScaffoldPTBD00000000SAMN08470384
S1AH041
GCA_003309605.1ScaffoldPTBC00000000SAMN08470385
S1AH044
GCA_003309595.1ScaffoldPTBB00000000SAMN08470386
S1AH053
GCA_003309585.1ScaffoldPTBA00000000SAMN08470387
S1AH063
GCA_003309535.1ScaffoldPTAY00000000SAMN08470389
S1AI048
GCA_003309545.1ScaffoldPTAZ00000000SAMN08470388
S1AL024
GCA_003309525.1ScaffoldPTAX00000000SAMN08470390
S1AJ062
GCA_003309475.1ScaffoldPTAT00000000SAMN08470394
S2AE2
GCA_003309465.1ScaffoldPTAS00000000SAMN08470395
S2AY11
GCA_003309485.1ScaffoldPTAU00000000SAMN08470393
S2AB5-2
GCA_003309445.1ScaffoldPTAR00000000SAMN08470396
S2AY23
GCA_003309405.1ScaffoldPTAQ00000000SAMN08470397
S2AY8
GCA_003309415.1ScaffoldPTAP00000000SAMN08470398
2BA2-1
GCA_003309345.1ScaffoldPTAM00000000SAMN08470401
AB1
GCA_003309385.1ScaffoldPTAO00000000SAMN08470399
2CY21
GCA_003309355.1ScaffoldPTAN00000000SAMN08470400
S2CY27
GCA_003309275.1ScaffoldPTAF00000000SAMN08470408
SDY82
GCA_003309325.1ScaffoldPTAJ00000000SAMN08470404
SDY17
GCA_003309285.1ScaffoldPTAG00000000SAMN08470407
DY77
GCA_003309265.1ScaffoldPTAE00000000SAMN08470409
E77
GCA_003309215.1ScaffoldPTAB00000000SAMN08470412
F2
GCA_003309235.1ScaffoldPTAC00000000SAMN08470411
SEY49-1
GCA_003309205.1ScaffoldPTAA00000000SAMN08470413
SGY37
GCA_003309175.1ScaffoldPSZZ00000000SAMN08470414
SHY37-1
GCA_003309165.1ScaffoldPSZW00000000SAMN08470418
YF037
GCA_003309145.1ScaffoldPSZV00000000SAMN08470419
YG029
GCA_003309125.1ScaffoldPSZU00000000SAMN08470420
YH022
GCA_003309105.1ScaffoldPSZT00000000SAMN08470421
YH030
GCA_003309085.1ScaffoldPSZS00000000SAMN08470422
YI040
GCA_003309045.1ScaffoldPSZR00000000SAMN08470423
YK046

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    Staphylococcus aureus
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