Bacteria (ID 417228) - BioProject

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Accession: PRJNA417228 ID: 417228

Bacteria

Characterization of bacterial pathogens from informal dairy value chains in Ghana

The aim of this research was to provide information on the hygienic quality of milk as it transitions through the informal dairy value chains in Ghana, and generate data on prevalence, distribution, and characterization of phenotypes and genotypes of significant pathogens in dairy.

Accession	PRJNA417228
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 26-Apr-2018 Alborada Research Fund - University of Ghana
Related Resources	Cambridge-Africa Partnership for Research Excellence
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	826
WGS master	19
Protein Sequences	85635
Other datasets
BioSample	19
Assembly	19

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

7
12
19

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003073025.1	PGDN00000000	SAMN07981109	ARWAII	Salmonella enterica subsp. enterica serovar Muenster
GCA_003073005.1	PGDP00000000	SAMN07981107	ARWAIB	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072985.1	PGDO00000000	SAMN07981108	ARWAIC	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072965.1	PGDL00000000	SAMN07981111	NRWCIB	Salmonella enterica subsp. enterica serovar Legon
GCA_003072945.1	PGDK00000000	SAMN07981112	NRWCIC	Salmonella enterica subsp. enterica serovar Legon
GCA_003072925.1	PGDM00000000	SAMN07981110	NRWCIA	Salmonella enterica subsp. enterica serovar Legon
GCA_003072905.1	PGDJ00000000	SAMN07981113	NRWCIIA	Salmonella enterica subsp. enterica serovar Legon
GCA_003072885.1	PGDG00000000	SAMN07981116	NRWCIIIB	Salmonella enterica subsp. enterica serovar Legon
GCA_003072865.1	PGDI00000000	SAMN07981114	NRWCIIB	Salmonella enterica subsp. enterica serovar Legon
GCA_003072845.1	PGDH00000000	SAMN07981115	NRWCIIIA	Salmonella enterica subsp. enterica serovar Legon
GCA_003072825.1	PGDE00000000	SAMN07981118	NRWCIVB	Salmonella enterica subsp. enterica serovar Legon
GCA_003072805.1	PGDD00000000	SAMN07981119	TRWAIA	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072785.1	PGDF00000000	SAMN07981117	NRWCIVA	Salmonella enterica subsp. enterica serovar Legon
GCA_003072765.1	PGDB00000000	SAMN07981121	TRWAIB2	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072725.1	PGCY00000000	SAMN07981124	TRWAIIB2	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072745.1	PGDC00000000	SAMN07981120	TRWAIB	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072705.1	PHQV00000000	SAMN07981106	ARWAIA	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072675.1	PGCZ00000000	SAMN07981123	TRWAIIB	Salmonella enterica subsp. enterica serovar Muenster
GCA_003072665.1	PGDA00000000	SAMN07981122	TRWAIIA	Salmonella enterica subsp. enterica serovar Muenster

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Bacteria

Characterization of bacterial pathogens from informal dairy value chains in Ghana

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