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Accession: PRJNA358390 ID: 358390

Haemophilus influenzae

Haemophilus influenzae Genome sequencing and assembly

See Genome Information for Haemophilus influenzae
In an 18-year ongoing prospective study to elucidate the dynamics of bacterial colonization and infection of the respiratory tract in adults with chronic obstructive pulmonary disease (COPD), we have established that a large proportion of patients show persistent colonization by non-typeable Haemophilus influenzae (NTHi). More...
AccessionPRJNA358390
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismHaemophilus influenzae[Taxonomy ID: 727]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus; Haemophilus influenzae
Grants
  • "Persistent Haemophilus influenzae in COPD - Virulence, vaccines and antibiotic resistance" (Grant ID 5R01AI01964130, National Institutes of Health)
SubmissionRegistration date: 9-Mar-2018
Institute for Genome Sciences, University of Maryland, Baltimore
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)28747
WGS master259
Genomic DNA13
Protein Sequences484666
Other datasets
BioSample276
Assembly272
Assembly details:
Assembly levelNumber of Assemblies
13
259
272
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_002989355.1ContigMZLS00000000
SAMN06203485
121P2H1
GCA_002989395.1ContigMZLQ00000000
SAMN06203487
122P4H1
GCA_002989365.1ContigMZLR00000000
SAMN06203486
122P13H1
GCA_002989335.1ContigMZLT00000000
SAMN06203484
121P25H1
GCA_002989305.1ContigMZLV00000000
SAMN06203480
116P14H1
GCA_002989295.1ContigMZLW00000000
SAMN06203478
111P90H1
GCA_002989275.1ContigMZLZ00000000
SAMN06203474
107P75H1
GCA_002989255.1ContigMZLX00000000
SAMN06203477
111P80H1
GCA_002989235.1ContigMZLY00000000
SAMN06203475
10P118H1
GCA_002989205.1ContigMZMD00000000
SAMN06203464
103P89H1
GCA_002989195.1ContigMZMA00000000
SAMN06203470
106P7H1
GCA_002989175.1ContigMZME00000000
SAMN06203463
103P85H1
GCA_002989155.1ContigMZMI00000000
SAMN06203457
101P53H1
GCA_002989135.1ContigMZMJ00000000
SAMN06203456
101P47H1
GCA_002989105.1ContigMZMK00000000
SAMN06203454
101P36H1
GCA_002989095.1ContigMZML00000000
SAMN06203453
101P19H1
GCA_002983745.1ContigNDYY00000000
SAMN06203455
101P3H1
GCA_002983755.1ContigNDYZ00000000
SAMN06203461
103P20H1
GCA_002983845.1ContigNDZF00000000
SAMN06203472
107P4H1
GCA_002983825.1ContigNDZE00000000
SAMN06203471
107P3H1
GCA_002983805.1ContigNDZC00000000
SAMN06203467
105P30H1
GCA_002983945.1ContigNDZI00000000
SAMN06203479
111P96H1
GCA_002983925.1ContigNDZJ00000000
SAMN06203481
116P1H1
GCA_002983905.1ContigNDZH00000000
SAMN06203476
10P129H1
GCA_002983885.1ContigNDZG00000000
SAMN06203473
107P50H1
GCA_002984105.1ContigNDZS00000000
SAMN06203501
126P26H1
GCA_002984085.1ContigNDZR00000000
SAMN06203500
126P21H1
GCA_002984065.1ContigNDZO00000000
SAMN06203494
124P4H1
GCA_002984005.1ContigNDZQ00000000
SAMN06203499
126P16H1
GCA_002984015.1ContigNDZL00000000
SAMN06203490
124P2H1
GCA_002984145.1ContigNDZT00000000
SAMN06203502
126P6H1
GCA_002983985.1ContigNDZN00000000
SAMN06203492
124P3H1
GCA_002984545.1ContigNEAY00000000
SAMN06203565
33P19H1
GCA_002984525.1ContigNEAX00000000
SAMN06203564
33P18H2
GCA_002984505.1ContigNEAV00000000
SAMN06203561
32P8H3
GCA_002984445.1ContigNEAR00000000
SAMN06203554
27P38H1
GCA_002984455.1ContigNEAT00000000
SAMN06203558
31P13H1
GCA_002984425.1ContigNEAN00000000
SAMN06203548
24P44H4
GCA_002984385.1ContigNEAL00000000
SAMN06203546
24P17H1
GCA_002984355.1ContigNEAJ00000000
SAMN06203544
1P18H1
GCA_002984345.1ContigNEAH00000000
SAMN06203540
19P68H7
GCA_002984325.1ContigNEAF00000000
SAMN06203534
18P17H2
GCA_002984305.1ContigNEAA00000000
SAMN06203513
135P16H1
GCA_002984245.1ContigNDZZ00000000
SAMN06203512
133P50H1
GCA_002984255.1ContigNEAB00000000
SAMN06203517
138P39H1
GCA_002984225.1ContigNDZY00000000
SAMN06203510
133P17H1
GCA_002984185.1ContigNDZX00000000
SAMN06203509
12P95H1
GCA_002984165.1ContigNDZV00000000
SAMN06203506
128P56H1
GCA_002991485.1ContigNEBL00000000
SAMN06203590
45P9H2
GCA_002991465.1ContigMZJN00000000
SAMN06203607
48P45H1
GCA_002991445.1ContigMZJR00000000
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47P36H1
GCA_002991415.1ContigMZJW00000000
SAMN06203585
44P104H1
GCA_002991405.1ContigNESZ00000000
SAMN06203677
84P14H2
GCA_002991385.1ContigMZJX00000000
SAMN06203581
40P41H1
GCA_002991365.1ContigMZJZ00000000
SAMN06203577
39P25H
GCA_002991345.1ContigMZKG00000000
SAMN06203559
31P14H6
GCA_002991325.1ContigMZKJ00000000
SAMN06203553
27P12H6
GCA_002991285.1ContigMZKR00000000
SAMN06203532
14P8H4
GCA_002991295.1ContigMZKL00000000
SAMN06203543
1P16H5
GCA_002991265.1ContigMZKW00000000
SAMN06203527
14P33H2
GCA_002991245.1ContigMZKZ00000000
SAMN06203524
14P13H9
GCA_002991225.1ContigMZKS00000000
SAMN06203531
14P6H
GCA_002991205.1ContigMZLH00000000
SAMN06203511
133P41H1
GCA_002991135.1ContigMZLB00000000
SAMN06203522
149P2H1
GCA_002991085.1ContigMZLI00000000
SAMN06203508
12P56H2
GCA_002991045.1ContigMZLO00000000
SAMN06203493
124P40H1
GCA_002991005.1ContigMZLU00000000
SAMN06203482
118P3H1
GCA_002990975.1ContigMZLK00000000
SAMN06203503
127P5H1
GCA_002990905.1ContigMZMF00000000
SAMN06203460
102P32H1
GCA_002990865.1ContigMZMB00000000
SAMN06203468
105P9H1
GCA_002990825.1ContigMZMC00000000
SAMN06203465
105P26H2
GCA_002990785.1ContigMZMG00000000
SAMN06203459
102P20H1
GCA_002990745.1ContigMZMH00000000
SAMN06203458
102P16H1
GCA_002990685.1ContigMZJO00000000
SAMN06203604
48P160H1
GCA_002990655.1ContigMZJP00000000
SAMN06203600
47P68H1
GCA_002990605.1ContigMZJQ00000000
SAMN06203598
47P38H1
GCA_002990565.1ContigMZJS00000000
SAMN06203595
47P12H2
GCA_002990535.1ContigMZJT00000000
SAMN06203593
46P30H6
GCA_002990495.1ContigMZJU00000000
SAMN06203589
45P11H1
GCA_002990445.1ContigMZJV00000000
SAMN06203587
44P204H1
GCA_002990405.1ContigMZJY00000000
SAMN06203578
39P29H1
GCA_002990375.1ContigMZKA00000000
SAMN06203576
39P20H1
GCA_002990305.1ContigMZKB00000000
SAMN06203573
39P13H
GCA_002990315.1ContigNDWW00000000
SAMN06203574
39P18H1
GCA_002990245.1ContigMZKC00000000
SAMN06203568
34P4H6
GCA_002990205.1ContigMZKD00000000
SAMN06203567
34P10H2
GCA_002990165.1ContigMZKE00000000
SAMN06203566
33P46H1
GCA_002990135.1ContigMZKF00000000
SAMN06203563
33P125H1
GCA_002990095.1ContigMZKH00000000
SAMN06203556
27P5H2
GCA_002990065.1ContigMZKI00000000
SAMN06203555
27P39H1
GCA_002990005.1ContigMZKK00000000
SAMN06203551
26P2H
GCA_002989965.1ContigMZKM00000000
SAMN06203542
19P94H1
GCA_002989925.1ContigMZKN00000000
SAMN06203539
19P49H1
GCA_002989905.1ContigMZKO00000000
SAMN06203538
19P173H1
GCA_002989845.1ContigMZKP00000000
SAMN06203536
19P126H1
GCA_002989805.1ContigMZKQ00000000
SAMN06203535
19P115H1
GCA_002989765.1ContigMZKT00000000
SAMN06203530
14P46H1
GCA_002989695.1ContigMZKV00000000
SAMN06203528
14P35H1
GCA_002989715.1ContigMZKU00000000
SAMN06203529
14P41H1
GCA_002989655.1ContigMZLC00000000
SAMN06203520
148P17H1
GCA_002989635.1ContigMZKX00000000
SAMN06203526
14P26H2
GCA_002989595.1ContigMZLA00000000
SAMN06203523
14P12H1
GCA_002989615.1ContigMZKY00000000
SAMN06203525
14P23H1
GCA_002989575.1ContigMZLD00000000
SAMN06203519
13P36H1
GCA_002989545.1ContigMZLE00000000
SAMN06203516
138P2H1
GCA_002989535.1ContigMZLF00000000
SAMN06203515
135P30H1
GCA_002989515.1ContigMZLG00000000
SAMN06203514
135P29H4
GCA_002989475.1ContigMZLM00000000
SAMN06203497
126P11H1
GCA_002989465.1ContigMZLN00000000
SAMN06203495
124P6H1
GCA_002989455.1ContigMZLJ00000000
SAMN06203504
127P6H1
GCA_002989435.1ContigMZLL00000000
SAMN06203498
126P12H2
GCA_002989415.1ContigMZLP00000000
SAMN06203489
124P1H1
GCA_002989055.1ContigMZGY00000000
SAMN06203720
99P27H1
GCA_002989035.1ContigMZHA00000000
SAMN06203718
99P15H1
GCA_002989005.1ContigNEDG00000000
SAMN06203717
98P5H3
GCA_002988995.1ContigMZHB00000000
SAMN06203715
96P6H1
GCA_002988975.1ContigMZHD00000000
SAMN06203712
96P15H1
GCA_002988945.1ContigNEDE00000000
SAMN06203713
96P29H1
GCA_002988935.1ContigNEDC00000000
SAMN06203709
94P40H1
GCA_002988915.1ContigNEDD00000000
SAMN06203711
94P5H
GCA_002988875.1ContigMZHK00000000
SAMN06203700
91P3H3
GCA_002988855.1ContigMZHM00000000
SAMN06203698
91P114H1
GCA_002988835.1ContigNECX00000000
SAMN06203696
87P37H1
GCA_002988815.1ContigNECT00000000
SAMN06203692
84P7H1
GCA_002988795.1ContigMZHN00000000
SAMN06203691
84P5H1
GCA_002988775.1ContigNECQ00000000
SAMN06203684
84P23H6
GCA_002988755.1ContigNECP00000000
SAMN06203682
84P21H1
GCA_002988735.1ContigNECM00000000
SAMN06203670
74P49H2
GCA_002988715.1ContigMZIB00000000
SAMN06203669
74P23H1
GCA_002988695.1ContigNECJ00000000
SAMN06203662
72P12H1
GCA_002988655.1ContigMZII00000000
SAMN06203659
6P9H1
GCA_002988665.1ContigMZID00000000
SAMN06203666
74P15H1
GCA_002988635.1ContigMZIK00000000
SAMN06203657
6P5H
GCA_002988615.1ContigNECI00000000
SAMN06203651
68P37H1
GCA_002988595.1ContigMZIP00000000
SAMN06203647
67P23H1
GCA_002988575.1ContigMZIQ00000000
SAMN06203646
67P10H5
GCA_002988555.1ContigNECF00000000
SAMN06203641
63P46H1
GCA_002988525.1ContigMZIS00000000
SAMN06203642
63P50H1
GCA_002988505.1ContigNECD00000000
SAMN06203632
59P1H1
GCA_002988495.1ContigMZIY00000000
SAMN06203631
59P16H1
GCA_002988465.1ContigMZJG00000000
SAMN06203618
55P21H1
GCA_002988455.1ContigMZJA00000000
SAMN06203629
57P13H1
GCA_002988415.1ContigMZJH00000000
SAMN06203617
54P33H2
GCA_002988425.1ContigMZJE00000000
SAMN06203621
56P16H1
GCA_002988385.1ContigMZJM00000000
SAMN06203608
49P21H1
GCA_002988375.1ContigNEDI00000000
SAMN06203722
99P50H1
GCA_002988355.1ContigNEDH00000000
SAMN06203721
99P41H1
GCA_002988335.1ContigMZGZ00000000
SAMN06203719
99P1H1
GCA_002988315.1ContigNEDF00000000
SAMN06203716
96P6H3
GCA_002988295.1ContigMZHC00000000
SAMN06203714
96P3H1
GCA_002988255.1ContigMZHE00000000
SAMN06203710
94P41H1
GCA_002988275.1ContigMZHF00000000
SAMN06203708
94P20H1
GCA_002988225.1ContigMZHG00000000
SAMN06203706
93P6H1
GCA_002988195.1ContigNEDB00000000
SAMN06203707
94P17H1
GCA_002988175.1ContigNECZ00000000
SAMN06203704
93P1H1
GCA_002988155.1ContigMZHI00000000
SAMN06203702
91P86H1
GCA_002988135.1ContigMZHL00000000
SAMN06203699
91P18H1
GCA_002987925.1ContigNECY00000000
SAMN06203697
91P109H1
GCA_002987945.1ContigMZHJ00000000
SAMN06203701
91P4H1
GCA_002987835.1ContigNECV00000000
SAMN06203694
87P128H2
GCA_002987795.1ContigNECW00000000
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87P138H1
GCA_002987735.1ContigNECU00000000
SAMN06203693
84P8H1
GCA_002987705.1ContigMZHP00000000
SAMN06203689
84P48H1
GCA_002987645.1ContigMZHO00000000
SAMN06203690
84P56H1
GCA_002987585.1ContigNECS00000000
SAMN06203688
84P37H2
GCA_002987475.1ContigNECR00000000
SAMN06203685
84P28H1
GCA_002987425.1ContigMZHS00000000
SAMN06203683
84P23H1
GCA_002987435.1ContigMZHQ00000000
SAMN06203687
84P36H1
GCA_002987315.1ContigMZHR00000000
SAMN06203686
84P29H1
GCA_002987275.1ContigNECO00000000
SAMN06203680
84P18H1
GCA_002987225.1ContigMZHT00000000
SAMN06203681
84P20H1
GCA_002987175.1ContigNECN00000000
SAMN06203678
84P15H1
GCA_002987085.1ContigMZHV00000000
SAMN06203676
84P13H1
GCA_002987015.1ContigMZHU00000000
SAMN06203679
84P15H4
GCA_002986965.1ContigMZHW00000000
SAMN06203675
84P12H1
GCA_002986795.1ContigMZHX00000000
SAMN06203674
81P25H1
GCA_002986695.1ContigMZHY00000000
SAMN06203673
7P49H2
GCA_002986665.1ContigMZHZ00000000
SAMN06203672
79P2H1
GCA_002986655.1ContigMZIC00000000
SAMN06203668
74P1H1
GCA_002986595.1ContigMZIA00000000
SAMN06203671
75P47H1
GCA_002986555.1ContigMZIE00000000
SAMN06203665
73P39H1
GCA_002986515.1ContigNECL00000000
SAMN06203667
74P16H1
GCA_002986475.1ContigMZIF00000000
SAMN06203664
73P2H1
GCA_002986425.1ContigNECK00000000
SAMN06203663
72P14H1
GCA_002986385.1ContigMZIG00000000
SAMN06203661
70P13H1
GCA_002986235.1ContigMZIJ00000000
SAMN06203658
6P8H2
GCA_002986245.1ContigMZIH00000000
SAMN06203660
70P11H1
GCA_002986175.1ContigMZIL00000000
SAMN06203654
6P22H1
GCA_002986125.1ContigMZIN00000000
SAMN06203652
69P2H1
GCA_002986055.1ContigMZIO00000000
SAMN06203649
67P50H1
GCA_002986025.1ContigMZIM00000000
SAMN06203653
69P7H1
GCA_002985955.1ContigNECH00000000
SAMN06203645
67P10H4
GCA_002985925.1ContigNECG00000000
SAMN06203644
66P36H1
GCA_002985895.1ContigMZIR00000000
SAMN06203643
63P90H1
GCA_002985855.1ContigNECE00000000
SAMN06203640
63P35H1
GCA_002985845.1ContigMZIT00000000
SAMN06203637
5P27H1
GCA_002985825.1ContigMZIV00000000
SAMN06203635
59P7H1
GCA_002985805.1ContigMZIU00000000
SAMN06203636
5P1H1
GCA_002985785.1ContigMZIW00000000
SAMN06203634
59P6H1
GCA_002985765.1ContigMZIX00000000
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59P3H1
GCA_002985745.1ContigMZIZ00000000
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57P20H1
GCA_002985725.1ContigMZJB00000000
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56P76H1
GCA_002985705.1ContigNECC00000000
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56P68H1
GCA_002985685.1ContigMZJC00000000
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56P54H1
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SAMN06203625
56P41H1
GCA_002985625.1ContigNECA00000000
SAMN06203624
56P34H1
GCA_002985615.1ContigMZJD00000000
SAMN06203623
56P1H1
GCA_002985605.1ContigNEBZ00000000
SAMN06203622
56P178H1
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SAMN06203619
55P3H1
GCA_002985555.1ContigNEBY00000000
SAMN06203620
56P127H1
GCA_002985545.1ContigNEBW00000000
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51P5H1
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51P4H
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50P5H1
GCA_002985365.1ContigNEBJ00000000
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49P5H1
GCA_002985345.1ContigNEBH00000000
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40P92H1
GCA_002985315.1ContigNEBE00000000
SAMN06203579
3P14H1
GCA_002985305.1ContigNEBG00000000
SAMN06203582
40P44H1
GCA_002985285.1ContigNEBC00000000
SAMN06203572
37P6H2
GCA_002985265.1ContigNEBA00000000
SAMN06203570
35P8H
GCA_002985245.1ContigNEBD00000000
SAMN06203575
39P1H1
GCA_002985225.1ContigNEAQ00000000
SAMN06203552
27P10H2
GCA_002985205.1ContigNEAW00000000
SAMN06203562
33P110H3
GCA_002985165.1ContigNEAS00000000
SAMN06203557
29P30H1
GCA_002985175.1ContigNEAU00000000
SAMN06203560
31P7H7
GCA_002985145.1ContigNEAP00000000
SAMN06203550
26P1H
GCA_002985085.1ContigNEAK00000000
SAMN06203545
1P22H3
GCA_002985105.1ContigNEAM00000000
SAMN06203547
24P29H
GCA_002985125.1ContigNEAO00000000
SAMN06203549
24P45H1
GCA_002985065.1ContigNEAI00000000
SAMN06203541
19P81H1
GCA_002985045.1ContigNEAG00000000
SAMN06203537
19P172H1
GCA_002985025.1ContigNEAE00000000
SAMN06203533
18P16H1
GCA_002985005.1ContigNEAD00000000
SAMN06203521
148P4H1
GCA_002984985.1ContigNEAC00000000
SAMN06203518
13P24H2
GCA_002984955.1ContigNDZU00000000
SAMN06203505
128P1H1
GCA_002984945.1ContigNDZW00000000
SAMN06203507
12P37H2
GCA_002984925.1ContigNDZP00000000
SAMN06203496
124P8H1
GCA_002984905.1ContigNDZM00000000
SAMN06203491
124P37H1
GCA_002984885.1ContigNDZK00000000
SAMN06203488
124P14H1
GCA_002984855.1ContigNDZD00000000
SAMN06203469
106P3H1
GCA_002984845.1ContigNDZB00000000
SAMN06203466
105P29H1
GCA_002984825.1ContigNDZA00000000
SAMN06203462
103P3H1
GCA_002984805.1ContigNEBS00000000
SAMN06203605
48P162H1
GCA_002984785.1ContigNEBR00000000
SAMN06203602
48P115H1
GCA_002984765.1ContigNEBP00000000
SAMN06203596
47P17H
GCA_002984745.1ContigNEBO00000000
SAMN06203594
46P8H1
GCA_002984725.1ContigNEBQ00000000
SAMN06203599
47P41H1
GCA_002984705.1ContigNEBN00000000
SAMN06203592
46P27H1
GCA_002984685.1ContigNEBM00000000
SAMN06203591
46P159H1
GCA_002984665.1ContigNEBK00000000
SAMN06203588
44P85H1
GCA_002984645.1ContigNEBI00000000
SAMN06203584
43P2H1
GCA_002984615.1ContigNEBF00000000
SAMN06203580
3P24H1
GCA_002984585.1ContigNEAZ00000000
SAMN06203569
34P8H9
GCA_002984595.1ContigNEBB00000000
SAMN06203571
37P4H1
GCA_002966735.1Complete genomeSAMN06203483
11P6H
GCA_002966715.1Complete genomeSAMN06203656
6P32H1
GCA_002966695.1Complete genomeSAMN06203655
6P24H2
GCA_002966675.1Complete genomeSAMN06203650
67P56H1
GCA_002966655.1Complete genomeSAMN06203648
67P38H1
GCA_002966635.1Complete genomeSAMN06203639
5P54H1
GCA_002966615.1Complete genomeSAMN06203638
5P28H1
GCA_002966595.1Complete genomeSAMN06203603
48P153H1
GCA_002966575.1Complete genomeSAMN06203601
48P106H1
GCA_028535135.1Complete genomeSAMN31697148
93P12H1
GCA_028535035.1Complete genomeSAMN31697149
93P16H1
GCA_002988885.2Complete genomeSAMN06203703
93P10H1
GCA_002988215.2Complete genomeSAMN06203705
93P28H1

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