Salmonella enterica subsp. enterica (ID 305824) - BioProject

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Accession: PRJNA305824 ID: 305824

Salmonella enterica subsp. enterica

Salmonella serovar Heidelberg genome sequencing

See Genome Information for Salmonella enterica

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3976 additional projects are related by organism.

This study was conducted to evaluate whole-genome sequencing and phylogenetic analysis as an alternative to conventional pulsed-field gel electrophoresis subtyping for Salmonella enterica serovar Heidelberg isolates. More...

Accession	PRJNA305824
Data Type	Genome sequencing
Scope	Multiisolate
Organism	Salmonella enterica subsp. enterica[Taxonomy ID: 59201] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica
Publications	Bekal S et al., "Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations.", J Clin Microbiol, 2016 Feb;54(2):289-95
Submission	Registration date: 21-Jul-2016 Laboratoire de sante publique du Quebec
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	19
SRA Experiments	65
Protein Sequences	26972
Publications
PubMed	1
PMC	1
Other datasets
BioSample	59
Assembly	6

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

6
6

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_001689935.1	3	SAMN04334633	SH12-007	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_001690005.1	3	SAMN04334629	SH12-003	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_001690035.1	4	SAMN04334672	SH14-028	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_001692535.1	2	SAMN04334642	SH13-006	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_001692655.1	5	SAMN04334653	SH14-009	Salmonella enterica subsp. enterica serovar Heidelberg
GCA_001692635.1	2	SAMN04334640	SH13-004	Salmonella enterica subsp. enterica serovar Heidelberg

SRA Data Details

Parameter	Value
Data volume, Gbases	43
Data volume, Mbytes	25794

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Salmonella enterica subsp. enterica

Salmonella serovar Heidelberg genome sequencing

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