Pseudomonas (ID 287460) - BioProject

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Accession: PRJNA287460 ID: 287460

Pseudomonas

Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex

Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex, for the study of the genomic basis of adaptation onto woody host species

Accession	PRJNA287460
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Pseudomonas[Taxonomy ID: 286] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
Publications	Nowell RW et al., "Comparative genomics reveals genes significantly associated with woody hosts in the plant pathogen Pseudomonas syringae.", Mol Plant Pathol, 2016 Dec;17(9):1409-1424
Grants	"BBSRC DTG" (Grant ID BB/F017030/1, Biotechnology and Biological Sciences Research Council)
Submission	Registration date: 25-Jan-2016 University of Edinburgh
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6321
WGS master	26
SRA Experiments	26
Protein Sequences	134556
Publications
PubMed	1
PMC	1
Other datasets
BioSample	26
Assembly	26

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

26
26

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001535805.1	LIHY00000000	SAMN03992212	CFBP 2897	Pseudomonas amygdali pv. myricae
GCA_001535785.1	LIHZ00000000	SAMN03992210	HRI-W 5269	Pseudomonas amygdali pv. morsprunorum
GCA_001535915.1	LIHQ00000000	SAMN03992222	CFBP 1407	Pseudomonas amygdali pv. ulmi
GCA_001535755.1	LIIA00000000	SAMN03992207	HRI-W 5261	Pseudomonas amygdali pv. morsprunorum
GCA_001535735.1	LIIB00000000	SAMN03992203	2341	Pseudomonas amygdali pv. morsprunorum
GCA_001538185.1	LILJ00000000	SAMN03991981	2315	Pseudomonas amygdali pv. aesculi
GCA_001538145.1	LIIE00000000	SAMN03992196	CFBP 3226	Pseudomonas amygdali pv. dendropanacis
GCA_001537955.1	LILK00000000	SAMN03992138	2329	Pseudomonas amygdali pv. aesculi
GCA_001537965.1	LIKY00000000	SAMN03782321	2113	Pseudomonas amygdali pv. aesculi
GCA_001538045.1	LILH00000000	SAMN03989044	2279	Pseudomonas amygdali pv. aesculi
GCA_001537985.1	LILI00000000	SAMN03991891	2306	Pseudomonas amygdali pv. aesculi
GCA_001538085.1	LILL00000000	SAMN03992139	2336	Pseudomonas amygdali pv. aesculi
GCA_001538055.1	LIID00000000	SAMN03992199	CFBP 2343	Pseudomonas amygdali pv. eriobotryae
GCA_001535815.1	LIHX00000000	SAMN03992215	CFBP 5067	Pseudomonas savastanoi pv. nerii
GCA_001538155.1	LIIC00000000	SAMN03992201	CFBP 5062	Pseudomonas savastanoi pv. fraxini
GCA_001538245.1	LIIH00000000	SAMN03992189	CFBP 4217	Pseudomonas syringae pv. castaneae
GCA_001538205.1	LIII00000000	SAMN03992188	CFBP 5140	Pseudomonas syringae pv. broussonetiae
GCA_001538255.1	LIIF00000000	SAMN03992192	CFBP 4219	Pseudomonas syringae pv. daphniphylli
GCA_001538095.1	LIIJ00000000	SAMN03992187	CFBP 3846	Pseudomonas syringae pv. avii
GCA_001537945.1	LIIG00000000	SAMN03992190	CFBP 6109	Pseudomonas syringae pv. cerasicola
GCA_001535725.1	LIHT00000000	SAMN03992219	2340	Pseudomonas syringae pv. syringae
GCA_001535905.1	LIHW00000000	SAMN03992216	CFBP 1754	Pseudomonas syringae pv. papulans
GCA_001535945.1	LIHR00000000	SAMN03992221	HRI-W 7924	Pseudomonas syringae pv. syringae
GCA_001535875.1	LIHS00000000	SAMN03992220	HRI-W 7872	Pseudomonas syringae pv. syringae
GCA_001535855.1	LIHU00000000	SAMN03992218	2339	Pseudomonas syringae pv. syringae
GCA_001535835.1	LIHV00000000	SAMN03992217	CFBP 4220	Pseudomonas syringae pv. rhaphiolepidis

SRA Data Details

Parameter	Value
Data volume, Gbases	21
Data volume, Mbytes	14176

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Pseudomonas

Genome sequencing and assembly of 26 lineages from the Pseudomonas syringae species complex

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