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Accession: PRJEB6447 ID: 260147

Escherichia coli strain:fhi

Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway.

See Genome Information for Escherichia coli
Shiga toxin-producing Escherichia coli (STEC) cause infections in humans ranging from asymptomatic carriage to bloody diarrhoea and haemolytic uremic syndrome (HUS). More...
AccessionPRJEB6447
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 6-Sep-2014
NTNU
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)11297
WGS master49
Genomic DNA2161
Protein Sequences5336
Other datasets
BioSample97
Assembly97
Assembly details:
Assembly levelNumber of Assemblies
48
49
97
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000946755.2ContigSAMEA2593943
FHI63
GCA_000936225.2ContigSAMEA2593909
FHI24
GCA_000951915.2ContigSAMEA2593930
FHI48
GCA_000936085.2ContigSAMEA2593969
FHI90
GCA_000937095.2ContigSAMEA2593966
FHI87
GCA_000937135.2ContigSAMEA2593954
FHI74
GCA_000937715.2ContigSAMEA2593945
FHI65
GCA_000940035.2ContigSAMEA2593968
FHI89
GCA_000943355.2ContigSAMEA2593925
FHI42
GCA_000945615.2ContigSAMEA2593912
FHI28
GCA_000951835.2ContigSAMEA2593891
FHI4
GCA_002999675.1ContigPVRW00000000SAMN08637915
St. Olav164
GCA_000753535.1ScaffoldCCQI00000000SAMEA2593936
FHI54
GCA_000753515.1ScaffoldCCPQ00000000SAMEA2593899
FHI13
GCA_000753275.1ScaffoldCCRD00000000SAMEA2593973
FHI95
GCA_000753255.1ScaffoldCCRC00000000SAMEA2593965
FHI86
GCA_000753415.1ScaffoldCCQY00000000SAMEA2593972
FHI93
GCA_000753215.1ScaffoldCCPV00000000SAMEA2593919
FHI36
GCA_000753195.1ScaffoldCCQG00000000SAMEA2593903
FHI17
GCA_000753155.1ScaffoldCCQX00000000SAMEA2593967
FHI88
GCA_000753135.1ScaffoldCCQN00000000SAMEA2593944
FHI64
GCA_000753115.1ScaffoldCCQM00000000SAMEA2593927
FHI45
GCA_000753315.1ScaffoldCCQJ00000000SAMEA2593918
FHI35
GCA_000753075.1ScaffoldCCQR00000000SAMEA2593953
FHI73
GCA_000752975.1ScaffoldCCQZ00000000SAMEA2593982
StOlav172
GCA_000752955.1ScaffoldCCVS00000000SAMEA2593970
FHI91
GCA_000752935.1ScaffoldCCQB00000000SAMEA2593931
FHI49
GCA_000752775.1ScaffoldCCQC00000000SAMEA2593892
FHI5
GCA_000752755.1ScaffoldCCPS00000000SAMEA2593907
FHI22
GCA_000752735.1ScaffoldCCQK00000000SAMEA2593937
FHI56
GCA_000752695.1ScaffoldCCRE00000000SAMEA2593974
FHI96
GCA_000752595.1ScaffoldCCQE00000000SAMEA2593902
FHI16
GCA_000752575.1ScaffoldCCQV00000000SAMEA2593960
FHI81
GCA_000752555.1ScaffoldCCQT00000000SAMEA2593956
FHI76
GCA_000752535.1ScaffoldCCQO00000000SAMEA2593947
FHI67
GCA_000753035.1ScaffoldCCPW00000000SAMEA2593921
FHI38
GCA_000752835.1ScaffoldCCRA00000000SAMEA2593935
FHI53
GCA_000752815.1ScaffoldCCPU00000000SAMEA2593920
FHI37
GCA_000752915.1ScaffoldCCQS00000000SAMEA2593957
FHI77
GCA_000752895.1ScaffoldCCPP00000000SAMEA2593979
FHI101
GCA_000752875.1ScaffoldCCPX00000000SAMEA2593922
FHI39
GCA_000752855.1ScaffoldCCPR00000000SAMEA2593904
FHI19
GCA_000752355.1ScaffoldCCQD00000000SAMEA2593932
FHI50
GCA_000752315.1ScaffoldCCVP00000000SAMEA2593916
FHI32
GCA_000752295.1ScaffoldCCQU00000000SAMEA2593958
FHI78
GCA_000752255.1ScaffoldCCRB00000000SAMEA2593940
FHI60
GCA_000752235.1ScaffoldCCQP00000000SAMEA2593949
FHI69
GCA_000752455.1ScaffoldCCVO00000000SAMEA2593915
FHI31
GCA_000752435.1ScaffoldCCPO00000000SAMEA2593888
FHI1
GCA_000752415.1ScaffoldCCQQ00000000SAMEA2593948
FHI68
GCA_000752655.1ScaffoldCCQA00000000SAMEA2593929
FHI47
GCA_000752635.1ScaffoldCCVQ00000000SAMEA2593963
FHI84
GCA_000752615.1ScaffoldCCVR00000000SAMEA2593981
StOlav143
GCA_000752515.1ScaffoldCCQL00000000SAMEA2593941
FHI61
GCA_000752495.1ScaffoldCCQF00000000SAMEA2593889
FHI2
GCA_000752155.1ScaffoldCCQH00000000SAMEA2593934
FHI52
GCA_000752135.1ScaffoldCCQW00000000SAMEA2593933
FHI51
GCA_000752115.1ScaffoldCCPZ00000000SAMEA2593928
FHI46
GCA_000752195.1ScaffoldCCPT00000000SAMEA2593890
FHI3
GCA_000752175.1ScaffoldCCPY00000000SAMEA2593924
FHI41
GCA_000935905.1ContigSAMEA2593906
FHI21
GCA_000936125.1ContigSAMEA2593955
FHI75
GCA_000936245.1ContigSAMEA2593894
FHI7
GCA_000936635.1ContigSAMEA2593897
FHI11
GCA_000936495.1ContigSAMEA2593980
FHI102
GCA_000936475.1ContigSAMEA2593946
FHI66
GCA_000937275.1ContigSAMEA2593898
FHI12
GCA_000938695.1ContigSAMEA2593962
FHI83
GCA_000937855.1ContigSAMEA2593908
FHI23
GCA_000937415.1ContigSAMEA2593976
FHI98
GCA_000939195.1ContigSAMEA2593896
FHI9
GCA_000938995.1ContigSAMEA2593910
FHI25
GCA_000939255.1ContigSAMEA2593952
FHI72
GCA_000940255.1ContigSAMEA2593901
FHI15
GCA_000939755.1ContigSAMEA2593926
FHI43
GCA_000940355.1ContigSAMEA2593938
FHI58
GCA_000940115.1ContigSAMEA2593905
FHI20
GCA_000939955.1ContigSAMEA2593959
FHI79
GCA_000940655.1ContigSAMEA2593950
FHI70
GCA_000941995.1ContigSAMEA2593939
FHI59
GCA_000941895.1ContigSAMEA2593893
FHI6
GCA_000941835.1ContigSAMEA2593923
FHI40
GCA_000941575.1ContigSAMEA2593971
FHI92
GCA_000941395.1ContigSAMEA2593895
FHI8
GCA_000941935.1ContigSAMEA2593961
FHI82
GCA_000944015.1ContigSAMEA2593951
FHI71
GCA_000942915.1ContigSAMEA2593913
FHI29
GCA_000945955.1ContigSAMEA2593964
FHI85
GCA_000951955.1ContigSAMEA2593978
FHI100
GCA_000951935.1ContigSAMEA2593977
FHI99
GCA_000951895.1ContigSAMEA2593914
FHI30
GCA_000951875.1ContigSAMEA2593911
FHI27
GCA_000951855.1ContigSAMEA2593900
FHI14
GCA_000947315.1ContigSAMEA2593983
StOlav104
GCA_000946475.1ContigSAMEA2593917
FHI34
GCA_000946435.1ContigSAMEA2593942
FHI62
GCA_000946275.1ContigSAMEA2593975
FHI97

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  • Escherichia coli strain:fhi
    Escherichia coli strain:fhi
    Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway.
    BioProject

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