Escherichia coli (ID 232925) - BioProject

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Accession: PRJNA232925 ID: 232925

Escherichia coli

GenomeTrakr Project: New York State Dept. of Health, Wadsworth Center

See Genome Information for Escherichia coli

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9336 additional projects are related by organism.

Whole genome sequencing of cultured E.coli as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.

Accession	PRJNA232925
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 9-Apr-2020 Wadsworth Center / NYSDOH
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	174
SRA Experiments	177
Other datasets
BioSample	192
Assembly	174

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

174
174

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_026278505.1	ABJMNZ000000000	SAMN31818505	42-1-cip	Escherichia coli
GCA_026272335.1	ABJMFV000000000	SAMN31818503	38-6-cip	Escherichia coli
GCA_026272315.1	ABJMFU000000000	SAMN31818502	38-5-cip	Escherichia coli
GCA_026271615.1	ABJMEV000000000	SAMN31818504	41-1-cip	Escherichia coli
GCA_026271595.1	ABJMEU000000000	SAMN31818501	38-3-cip	Escherichia coli
GCA_026271575.1	ABJMET000000000	SAMN31818500	38-1-cip	Escherichia coli
GCA_026270495.1	ABJMDZ000000000	SAMN31818499	36-1-cip	Escherichia coli
GCA_026270475.1	ABJMDY000000000	SAMN31818498	25-3-cip	Escherichia coli
GCA_027901415.1	ABKCZP000000000	SAMN32494094	4-1-cefta	Escherichia coli
GCA_027904935.1	ABKDFO000000000	SAMN32494102	25-1-cip	Escherichia coli
GCA_027904915.1	ABKDFN000000000	SAMN32494101	23-2-cip	Escherichia coli
GCA_027904895.1	ABKDFP000000000	SAMN32494103	25-2-cip	Escherichia coli
GCA_027904855.1	ABKDFK000000000	SAMN32494099	22-7-cip	Escherichia coli
GCA_027904875.1	ABKDFL000000000	SAMN32494100	23-1-cip	Escherichia coli
GCA_027904835.1	ABKDFJ000000000	SAMN32494098	21-1-cefta	Escherichia coli
GCA_027904815.1	ABKDFI000000000	SAMN32494097	8-3-cip	Escherichia coli
GCA_027904795.1	ABKDFG000000000	SAMN32494108	42-4-cip	Escherichia coli
GCA_027904775.1	ABKDFH000000000	SAMN32494107	42-3-cip	Escherichia coli
GCA_027904755.1	ABKDFD000000000	SAMN32494105	27-3-cip	Escherichia coli
GCA_027904735.1	ABKDFF000000000	SAMN32494096	4-3-cefta	Escherichia coli
GCA_027904715.1	ABKDFC000000000	SAMN32494104	27-1-cip	Escherichia coli
GCA_027904695.1	ABKDFE000000000	SAMN32494106	35-1-cip	Escherichia coli
GCA_027904675.1	ABKDFB000000000	SAMN32494095	4-1-cip	Escherichia coli
GCA_028060055.1	ABKGHN000000000	SAMN32800347	106-1-cefta	Escherichia coli
GCA_028056935.1	ABKGBN000000000	SAMN32800346	104-1-cip	Escherichia coli
GCA_028056955.1	ABKGBP000000000	SAMN32800331	27-7-cefta	Escherichia coli
GCA_028055335.1	ABKGAH000000000	SAMN32800152	106-2-cip	Escherichia coli
GCA_028055275.1	ABKGAG000000000	SAMN32800344	79-1-cip	Escherichia coli
GCA_028053915.1	ABKFYZ000000000	SAMN32800340	57-3-cip	Escherichia coli
GCA_028054025.1	ABKFZB000000000	SAMN32800139	27-2-cip	Escherichia coli
GCA_028052105.1	ABKFWH000000000	SAMN32800339	53-2-cip	Escherichia coli
GCA_028051865.1	ABKFWO000000000	SAMN32800144	93-2-cip	Escherichia coli
GCA_028051845.1	ABKFWM000000000	SAMN32800143	93-1-cefta	Escherichia coli
GCA_028051825.1	ABKFWL000000000	SAMN32800149	97-1-cip	Escherichia coli
GCA_028051785.1	ABKFWI000000000	SAMN32800329	25-6-cefta	Escherichia coli
GCA_028051745.1	ABKFWG000000000	SAMN32800335	44-1-cip	Escherichia coli
GCA_028051725.1	ABKFWF000000000	SAMN32800323	22-4-cefta	Escherichia coli
GCA_028049245.1	ABKFVS000000000	SAMN32800148	97-1-cefta	Escherichia coli
GCA_028049235.1	ABKFVR000000000	SAMN32800147	95-1-cip	Escherichia coli
GCA_028048995.1	ABKFVG000000000	SAMN32800328	25-5-cefta	Escherichia coli
GCA_028048975.1	ABKFVF000000000	SAMN32800325	23-1-cefta	Escherichia coli
GCA_028048955.1	ABKFVD000000000	SAMN32800350	94-1 cip	Escherichia coli
GCA_028048935.1	ABKFVE000000000	SAMN32800349	75-4 cip	Escherichia coli
GCA_028048915.1	ABKFVC000000000	SAMN32800348	108-1-cip	Escherichia coli
GCA_028048895.1	ABKFVB000000000	SAMN32800345	81-1-cip	Escherichia coli
GCA_028048875.1	ABKFVA000000000	SAMN32800342	75-1-cip	Escherichia coli
GCA_028048855.1	ABKFUZ000000000	SAMN32800324	22-5-cefta	Escherichia coli
GCA_028048835.1	ABKFUY000000000	SAMN32800341	67-1-cip	Escherichia coli
GCA_028048815.1	ABKFUX000000000	SAMN32800338	51-2-cefta	Escherichia coli
GCA_028048795.1	ABKFUV000000000	SAMN32800337	48-2-cip	Escherichia coli
GCA_028048775.1	ABKFUR000000000	SAMN32800322	22-3-cefta	Escherichia coli
GCA_028048755.1	ABKFUW000000000	SAMN32800336	44-3-cip	Escherichia coli
GCA_028048735.1	ABKFUT000000000	SAMN32800334	42-5-cip	Escherichia coli
GCA_028048715.1	ABKFUU000000000	SAMN32800333	36-2-cefta	Escherichia coli
GCA_028048695.1	ABKFUS000000000	SAMN32800332	36-1-cefta	Escherichia coli
GCA_028050825.1	ABKFVX000000000	SAMN32800327	25-1-cefta	Escherichia coli
GCA_028050805.1	ABKFVY000000000	SAMN32800330	25-8-cefta	Escherichia coli
GCA_028050785.1	ABKFVW000000000	SAMN32800326	23-2-cefta	Escherichia coli
GCA_028050745.1	ABKFVV000000000	SAMN32800343	75-2-cip	Escherichia coli
GCA_028050885.1	ABKFWB000000000	SAMN32800150	105-1-cip	Escherichia coli
GCA_028049195.1	ABKFVQ000000000	SAMN32800146	95-1-cefta	Escherichia coli
GCA_028049175.1	ABKFVP000000000	SAMN32800145	94-2-cip	Escherichia coli
GCA_028049155.1	ABKFVO000000000	SAMN32800142	90-2-cip	Escherichia coli
GCA_028049115.1	ABKFVM000000000	SAMN32800153	110-1-cip	Escherichia coli
GCA_028049135.1	ABKFVN000000000	SAMN32800141	90-1-cip	Escherichia coli
GCA_028049055.1	ABKFVL000000000	SAMN32800151	106-1-cip	Escherichia coli
GCA_028049075.1	ABKFVK000000000	SAMN32800140	76-1-cip	Escherichia coli
GCA_019506065.1	ABBSIU000000000	SAMN20521992	BSK_EC11	Escherichia coli
GCA_019502225.1	ABBSBR000000000	SAMN20521988	BSK_EC2	Escherichia coli
GCA_019502205.1	ABBSBQ000000000	SAMN20521989	BSK_EC5	Escherichia coli
GCA_019502805.1	ABBSCS000000000	SAMN20521991	BSK_EC9	Escherichia coli
GCA_019502785.1	ABBSCU000000000	SAMN20521990	BSK_EC7	Escherichia coli
GCA_021198235.1	ABEHKQ000000000	SAMN24102763	UAB-CD-009	Escherichia coli
GCA_021198135.1	ABEHKT000000000	SAMN24102743	3108	Escherichia coli
GCA_021198085.1	ABEHKS000000000	SAMN24102754	4463	Escherichia coli
GCA_021212215.1	ABEHPS000000000	SAMN24102746	4308	Escherichia coli
GCA_021210755.1	ABEHNH000000000	SAMN24102760	4560	Escherichia coli
GCA_021210735.1	ABEHNJ000000000	SAMN24102742	3042	Escherichia coli
GCA_021210455.1	ABEHNG000000000	SAMN24102762	4574	Escherichia coli
GCA_021210435.1	ABEHNE000000000	SAMN24102755	4464	Escherichia coli
GCA_021210415.1	ABEHNC000000000	SAMN24102757	4478	Escherichia coli
GCA_021210145.1	ABEHMV000000000	SAMN24102749	4383	Escherichia coli
GCA_021209745.1	ABEHMY000000000	SAMN24102759	4535	Escherichia coli
GCA_021209695.1	ABEHNA000000000	SAMN24102758	4525	Escherichia coli
GCA_021209125.1	ABEHMG000000000	SAMN24102748	4344	Escherichia coli
GCA_021209065.1	ABEHMA000000000	SAMN24102744	3135	Escherichia coli
GCA_021208365.1	ABEHMT000000000	SAMN24102765	UAB-CD-014	Escherichia coli
GCA_021208275.1	ABEHMK000000000	SAMN24102756	4473	Escherichia coli
GCA_021208195.1	ABEHMJ000000000	SAMN24102764	UAB-CD-012	Escherichia coli
GCA_021208105.1	ABEHMC000000000	SAMN24102761	4573	Escherichia coli
GCA_021207975.1	ABEHMB000000000	SAMN24102747	4342	Escherichia coli
GCA_021207915.1	ABEHLY000000000	SAMN24102745	3167	Escherichia coli
GCA_021208045.1	ABEHMI000000000	SAMN24102753	4448	Escherichia coli
GCA_021206835.1	ABEHLK000000000	SAMN24102739	3018	Escherichia coli
GCA_021206775.1	ABEHLF000000000	SAMN24102766	UAB-CD-017	Escherichia coli
GCA_021206675.1	ABEHLL000000000	SAMN24102752	4428	Escherichia coli
GCA_021200115.1	ABEHKY000000000	SAMN24102750	4391	Escherichia coli
GCA_021310405.1	ABEMCE000000000	SAMN24467891	UAB-CV-455	Escherichia coli
GCA_021310395.1	ABEMCF000000000	SAMN24467889	UAB-CV-428	Escherichia coli
GCA_021310375.1	ABEMCC000000000	SAMN24467890	UAB-CV-429	Escherichia coli
GCA_021310355.1	ABEMCD000000000	SAMN24467888	UAB-CD-126	Escherichia coli
GCA_021309415.1	ABEMCA000000000	SAMN24467886	UAB-CD-123	Escherichia coli
GCA_021310935.1	ABEMDF000000000	SAMN24467893	UAB-CV-459	Escherichia coli
GCA_021310695.1	ABEMCT000000000	SAMN24467892	UAB-CV-456	Escherichia coli
GCA_021308935.1	ABEMBP000000000	SAMN24467887	UAB-CD-124	Escherichia coli
GCA_021567855.1	ABETJL000000000	SAMN25226488	UAB-CV-729	Escherichia coli
GCA_021567815.1	ABETJG000000000	SAMN25226480	UAB-CV-479	Escherichia coli
GCA_021567835.1	ABETJH000000000	SAMN25226483	UAB-CV-493	Escherichia coli
GCA_021568195.1	ABETJZ000000000	SAMN25226485	UAB-CV-661	Escherichia coli
GCA_021568175.1	ABETJW000000000	SAMN25226489	UAB-CV-730	Escherichia coli
GCA_021566395.1	ABETHL000000000	SAMN25226487	UAB-CV-705	Escherichia coli
GCA_021566335.1	ABETHB000000000	SAMN25226486	UAB-CV-703	Escherichia coli
GCA_021566315.1	ABETHA000000000	SAMN25226484	UAB-CV-536	Escherichia coli
GCA_021568135.1	ABETJU000000000	SAMN25226481	UAB-CV-481	Escherichia coli
GCA_021568115.1	ABETJT000000000	SAMN25226482	UAB-CV-490	Escherichia coli
GCA_022126505.1	ABFAXV000000000	SAMN25811208	UAB-CV-734	Escherichia coli
GCA_022126485.1	ABFAXP000000000	SAMN25811206	UAB-CD-050	Escherichia coli
GCA_022126465.1	ABFAXT000000000	SAMN25811220	UAB-CV-876	Escherichia coli
GCA_022126445.1	ABFAXR000000000	SAMN25811218	UAB-CV-822	Escherichia coli
GCA_022126425.1	ABFAXS000000000	SAMN25811204	UAB-CD-048	Escherichia coli
GCA_022126405.1	ABFAXO000000000	SAMN25811213	UAB-CV-776	Escherichia coli
GCA_022126385.1	ABFAXQ000000000	SAMN25811217	UAB-CV-814	Escherichia coli
GCA_022126305.1	ABFAXX000000000	SAMN25811200	UAB-CD-020	Escherichia coli
GCA_022137765.1	ABFAZC000000000	SAMN25811214	UAB-CV-788	Escherichia coli
GCA_022132005.1	ABFAYN000000000	SAMN25811209	UAB-CV-752	Escherichia coli
GCA_022131975.1	ABFAYM000000000	SAMN25811207	UAB-CD-097	Escherichia coli
GCA_022131945.1	ABFAYJ000000000	SAMN25811203	UAB-CD-047	Escherichia coli
GCA_022131855.1	ABFAYK000000000	SAMN25811219	UAB-CV-826	Escherichia coli
GCA_022131805.1	ABFAYL000000000	SAMN25811212	UAB-CV-761	Escherichia coli
GCA_022131785.1	ABFAYI000000000	SAMN25811211	UAB-CV-758	Escherichia coli
GCA_022131745.1	ABFAYG000000000	SAMN25811201	UAB-CD-026	Escherichia coli
GCA_022127445.1	ABFAYC000000000	SAMN25811205	UAB-CD-049	Escherichia coli
GCA_022127425.1	ABFAYA000000000	SAMN25811222	UAB-CV-890	Escherichia coli
GCA_022127405.1	ABFAYB000000000	SAMN25811221	UAB-CV-877	Escherichia coli
GCA_022127385.1	ABFAXZ000000000	SAMN25811210	UAB-CV-755	Escherichia coli
GCA_022127365.1	ABFAXY000000000	SAMN25811216	UAB-CV-812	Escherichia coli
GCA_022137925.1	ABFAZD000000000	SAMN25811215	UAB-CV-789	Escherichia coli
GCA_023327785.1	ABGDGI000000000	SAMN28177617	UAB-CD-163	Escherichia coli
GCA_023327605.1	ABGDFX000000000	SAMN28177613	UAB-CD-015	Escherichia coli
GCA_023327545.1	ABGDFY000000000	SAMN28177614	UAB-CD-025	Escherichia coli
GCA_023327365.1	ABGDFN000000000	SAMN28177615	UAB-CD-035	Escherichia coli
GCA_023327325.1	ABGDFO000000000	SAMN28177616	UAB-CD-162	Escherichia coli
GCA_023387355.1	ABGFDV000000000	SAMN24102738	3013	Escherichia coli
GCA_023387475.1	ABGFDY000000000	SAMN24102741	3036	Escherichia coli
GCA_023387455.1	ABGFDX000000000	SAMN24102740	3034	Escherichia coli
GCA_023387405.1	ABGFDW000000000	SAMN24102751	4412	Escherichia coli
GCA_012833535.1	AATJJY000000000	SAMN02566895	ewgs1001	Escherichia coli
GCA_012833515.1	AATJKB000000000	SAMN02566896	ewgs1002	Escherichia coli
GCA_012833475.1	AATJJZ000000000	SAMN02566905	ewgs1011	Escherichia coli
GCA_012833395.1	AATJKA000000000	SAMN02566903	ewgs1009	Escherichia coli
GCA_012833315.1	AATJJW000000000	SAMN02566899	ewgs1005	Escherichia coli
GCA_012833295.1	AATJJS000000000	SAMN02566898	ewgs1004	Escherichia coli
GCA_012833235.1	AATJJV000000000	SAMN02566902	ewgs1008	Escherichia coli
GCA_012833245.1	AATJJM000000000	SAMN02566900	ewgs1006	Escherichia coli
GCA_012833175.1	AATJJO000000000	SAMN02566904	ewgs1010	Escherichia coli
GCA_012829535.1	AATJDX000000000	SAMN02597290	ewgs1018	Escherichia coli
GCA_012829435.1	AATJDV000000000	SAMN02597286	ewgs1014	Escherichia coli
GCA_012829115.1	AATJDP000000000	SAMN02597289	ewgs1017	Escherichia coli
GCA_012829095.1	AATJDS000000000	SAMN02597288	ewgs1016	Escherichia coli
GCA_012828875.1	AATJCJ000000000	SAMN02597287	ewgs1015	Escherichia coli
GCA_012827815.1	AATJAF000000000	SAMN02597291	ewgs1019	Escherichia coli
GCA_012241795.1	AASAIY000000000	SAMN02597325	ewgs1053	Escherichia coli
GCA_012225275.1	AARZWH000000000	SAMN02597311	ewgs1039	Escherichia coli
GCA_012225245.1	AARZWI000000000	SAMN02597312	ewgs1040	Escherichia coli
GCA_012225235.1	AARZWE000000000	SAMN02597313	ewgs1041	Escherichia coli
GCA_012242925.1	AASAIX000000000	SAMN02597320	ewgs1048	Escherichia coli
GCA_012242485.1	AASAJB000000000	SAMN02597316	ewgs1044	Escherichia coli
GCA_012245465.1	AASANQ000000000	SAMN02597322	ewgs1050	Escherichia coli
GCA_012219385.1	AARZYD000000000	SAMN02597326	ewgs1054	Escherichia coli
GCA_012219405.1	AARZYA000000000	SAMN02597321	ewgs1049	Escherichia coli
GCA_012219345.1	AARZYF000000000	SAMN02597324	ewgs1052	Escherichia coli
GCA_012219365.1	AARZXZ000000000	SAMN02597318	ewgs1046	Escherichia coli
GCA_012224865.1	AARZWB000000000	SAMN02597314	ewgs1042	Escherichia coli
GCA_012224825.1	AARZWD000000000	SAMN02597315	ewgs1043	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	109
Data volume, Mbytes	49646

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Escherichia coli

GenomeTrakr Project: New York State Dept. of Health, Wadsworth Center

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