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Accession: PRJNA176381 ID: 176381

Pathogenomics of Trypanosomatid Parasites

The family Trypanosomatidae of the protistan order Kinetoplastida includes three major lineages of human pathogens – the Leishmania and the African and American trypanosomes – that each rank within the top 10 in terms of global impact. The combined impact measured by DALY of these three parasites approaches 5 million. Perhaps unlike the situation found in other groups of eukaryotic pathogens, trypanosomatids present two unique challenges. First is the fact that within each of the three major lineages, a wide range of disease pathologies is found. Thus, we are probing multiple diseases. Second is the fact that the trypanosomatids are relatively ancient, with divergences amongst the major lineages ranging from 200-500 million years ago. Thus, there is a wide range of evolutionary and pathological ‘space’ to be explored by genomic methods, accompanied by great opportunities for new insights and discovery. More...
AccessionPRJNA176381
TypeUmbrella project (Subtype:Funding initiative)
SubmissionRegistration date: 1-Oct-2012
NHGRI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)4333
WGS master16
SRA Experiments103
Other datasets
BioSample42
Assembly16
SRA Data Details
ParameterValue
Data volume, Gbases200
Data volume, Tbytes0.18
This project encompasses the following 20 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

7
9
4
20
BioProject
accession
Assembly
level
OrganismTitle
PRJNA165885 ChromosomesCrithidia fasciculataCrithidia fasciculata strain:Cf-Cl Genome sequencing and assembly (Kinetoplastid Genomes Consortium)
PRJNA165953 ChromosomesEndotrypanum monterogeiiEndotrypanum monterogeii strain:LV88 Genome sequencing and assembly (Kinetoplastid Genomes Consortium)
PRJNA169673 ChromosomesLeishmania aethiopica L147Leishmania aethiopica L147 Genome sequencing and assembly (Kinetoplastid Genomes Consortium)
PRJNA192710 ChromosomesLeishmania arabicaLeishmania arabica strain:LEM1108 Genome sequencing (Kinetoplastid Genomes Consortium)
PRJNA165955 ChromosomesLeishmania braziliensis MHOM/BR/75/M2903Leishmania braziliensis MHOM/BR/75/M2903 Genome sequencing and assembly (Kinetoplastid Genomes Consortium)
List all 20 'Genome sequencing' projects...

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