ID 1204071 - BioProject

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Accession: PRJNA1204071 ID: 1204071

Citrobacter from a hospital

The aim of the study is to develop a core genome multi-locus sequence typing (cgMLST) scheme for Citrobacter freundii that can be used to investigate the genetic relationship in all areas where Citrobacter outbreaks can potentially occur, such as hospitals, care facilities, animal husbandry or food processing.

Accession	PRJNA1204071
Data Type	Genome sequencing
Scope	Multispecies
Submission	Registration date: 29-Dec-2024 University Hospital Regensburg
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	152
Other datasets
BioSample	152
Assembly	152

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

152
152

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_046556815.1	JBKGKA000000000	SAMN46010636	23x9351	Citrobacter amalonaticus
GCA_046559295.1	JBKGHT000000000	SAMN46010577	23x9132	Citrobacter amalonaticus
GCA_046559175.1	JBKGHX000000000	SAMN46010581	23x9799	Citrobacter braakii
GCA_046559075.1	JBKGHZ000000000	SAMN46010583	23x10200	Citrobacter braakii
GCA_046556715.1	JBKGKH000000000	SAMN46010643	23x3821	Citrobacter braakii
GCA_046556535.1	JBKGKL000000000	SAMN46010647	23x8734	Citrobacter braakii
GCA_046556355.1	JBKGMM000000000	SAMN46010700	9249	Citrobacter braakii
GCA_046555835.1	JBKGLE000000000	SAMN46010666	23x2123	Citrobacter braakii
GCA_046555815.1	JBKGLG000000000	SAMN46010668	23x2174	Citrobacter braakii
GCA_046556215.1	JBKGLF000000000	SAMN46010667	23x2173	Citrobacter braakii
GCA_046555695.1	JBKGLZ000000000	SAMN46010687	8196	Citrobacter braakii
GCA_046555675.1	JBKGMA000000000	SAMN46010688	8199	Citrobacter braakii
GCA_046555535.1	JBKGMG000000000	SAMN46010694	8889	Citrobacter braakii
GCA_046555515.1	JBKGMJ000000000	SAMN46010697	8978	Citrobacter braakii
GCA_046555735.1	JBKGLY000000000	SAMN46010686	4535	Citrobacter braakii
GCA_046555395.1	JBKGMO000000000	SAMN46010702	9658	Citrobacter europaeus
GCA_046556275.1	JBKGLI000000000	SAMN46010670	23x2349	Citrobacter europaeus
GCA_046556515.1	JBKGKU000000000	SAMN46010656	23x1498	Citrobacter europaeus
GCA_046556015.1	JBKGKR000000000	SAMN46010653	23x1433	Citrobacter europaeus
GCA_046556995.1	JBKGJS000000000	SAMN46010628	23x5138	Citrobacter europaeus
GCA_046559115.1	JBKGIE000000000	SAMN46010588	23x10658	Citrobacter farmeri
GCA_046559095.1	JBKGHY000000000	SAMN46010582	23x10019	Citrobacter freundii
GCA_046558955.1	JBKGIG000000000	SAMN46010590	23x10942	Citrobacter freundii
GCA_046559055.1	JBKGIA000000000	SAMN46010584	23x10225	Citrobacter freundii
GCA_046559035.1	JBKGIJ000000000	SAMN46010593	23x111186	Citrobacter freundii
GCA_046559015.1	JBKGII000000000	SAMN46010592	23x11185	Citrobacter freundii
GCA_046558995.1	JBKGIK000000000	SAMN46010594	23x139	Citrobacter freundii
GCA_046558915.1	JBKGIM000000000	SAMN46010596	23x11307	Citrobacter freundii
GCA_046558895.1	JBKGIT000000000	SAMN46010603	23x11748	Citrobacter freundii
GCA_046558875.1	JBKGIQ000000000	SAMN46010600	23x137	Citrobacter freundii
GCA_046558855.1	JBKGIL000000000	SAMN46010595	23x138	Citrobacter freundii
GCA_046558835.1	JBKGIR000000000	SAMN46010601	23x859	Citrobacter freundii
GCA_046558815.1	JBKGIN000000000	SAMN46010597	23x11309	Citrobacter freundii
GCA_046558795.1	JBKGIS000000000	SAMN46010602	23x11734	Citrobacter freundii
GCA_046558775.1	JBKGIO000000000	SAMN46010598	23x11315	Citrobacter freundii
GCA_046558715.1	JBKGIY000000000	SAMN46010608	23x12683-1	Citrobacter freundii
GCA_046558695.1	JBKGIX000000000	SAMN46010607	23x12676	Citrobacter freundii
GCA_046558675.1	JBKGJA000000000	SAMN46010610	23x12736	Citrobacter freundii
GCA_046558655.1	JBKGIP000000000	SAMN46010599	23x11336	Citrobacter freundii
GCA_046558635.1	JBKGIW000000000	SAMN46010606	23x12252	Citrobacter freundii
GCA_046558615.1	JBKGJB000000000	SAMN46010611	23x12846	Citrobacter freundii
GCA_046558575.1	JBKGJC000000000	SAMN46010612	23x12848	Citrobacter freundii
GCA_046558555.1	JBKGJG000000000	SAMN46010616	23x13112	Citrobacter freundii
GCA_046558535.1	JBKGIZ000000000	SAMN46010609	23x12733	Citrobacter freundii
GCA_046558515.1	JBKGJH000000000	SAMN46010617	23x12683-2	Citrobacter freundii
GCA_046559155.1	JBKGIB000000000	SAMN46010585	23x10316	Citrobacter freundii
GCA_046559135.1	JBKGIF000000000	SAMN46010589	23x10737	Citrobacter freundii
GCA_046559635.1	JBKGJI000000000	SAMN46010618	23x12683-3	Citrobacter freundii
GCA_046559195.1	JBKGID000000000	SAMN46010587	23x10472	Citrobacter freundii
GCA_046559275.1	JBKGHV000000000	SAMN46010579	23x9498	Citrobacter freundii
GCA_046559235.1	JBKGIC000000000	SAMN46010586	23x10404	Citrobacter freundii
GCA_046559395.1	JBKGHO000000000	SAMN46010572	23x7045	Citrobacter freundii
GCA_046559375.1	JBKGHM000000000	SAMN46010570	23x7042	Citrobacter freundii
GCA_046559355.1	JBKGHR000000000	SAMN46010575	23x571	Citrobacter freundii
GCA_046559335.1	JBKGHP000000000	SAMN46010573	23x7341	Citrobacter freundii
GCA_046559315.1	JBKGHU000000000	SAMN46010578	23x9280	Citrobacter freundii
GCA_046559595.1	JBKGJM000000000	SAMN46010622	23x12684-4	Citrobacter freundii
GCA_046559575.1	JBKGJD000000000	SAMN46010613	23x12854	Citrobacter freundii
GCA_046559555.1	JBKGJN000000000	SAMN46010623	23x12684-5	Citrobacter freundii
GCA_046559515.1	JBKGJO000000000	SAMN46010624	23x13151	Citrobacter freundii
GCA_046559495.1	JBKGJJ000000000	SAMN46010619	23x12683-4	Citrobacter freundii
GCA_046559475.1	JBKGJK000000000	SAMN46010620	23x12683-5	Citrobacter freundii
GCA_046557055.1	JBKGMY000000000	SAMN46010712	10200	Citrobacter freundii
GCA_046557035.1	JBKGNG000000000	SAMN46010720	9899-2	Citrobacter freundii
GCA_046556955.1	JBKGJU000000000	SAMN46010630	23x7470	Citrobacter freundii
GCA_046556875.1	JBKGJT000000000	SAMN46010629	23x7469	Citrobacter freundii
GCA_046556755.1	JBKGKF000000000	SAMN46010641	23x3985	Citrobacter freundii
GCA_046556795.1	JBKGKE000000000	SAMN46010640	23x1399	Citrobacter freundii
GCA_046556835.1	JBKGKD000000000	SAMN46010639	23x1000	Citrobacter freundii
GCA_046557095.1	JBKGMX000000000	SAMN46010711	7210	Citrobacter freundii
GCA_046557315.1	JBKGMV000000000	SAMN46010709	10048	Citrobacter freundii
GCA_046557295.1	JBKGMR000000000	SAMN46010705	9887	Citrobacter freundii
GCA_046557275.1	JBKGMN000000000	SAMN46010701	9315	Citrobacter freundii
GCA_046557255.1	JBKGMZ000000000	SAMN46010713	10390	Citrobacter freundii
GCA_046557235.1	JBKGMQ000000000	SAMN46010704	9850	Citrobacter freundii
GCA_046557215.1	JBKGMW000000000	SAMN46010710	2350	Citrobacter freundii
GCA_046557195.1	JBKGMS000000000	SAMN46010706	9899-1	Citrobacter freundii
GCA_046557175.1	JBKGNA000000000	SAMN46010714	10394	Citrobacter freundii
GCA_046557155.1	JBKGNE000000000	SAMN46010718	10753	Citrobacter freundii
GCA_046557135.1	JBKGND000000000	SAMN46010717	10752	Citrobacter freundii
GCA_046555995.1	JBKGKY000000000	SAMN46010660	23x184	Citrobacter freundii
GCA_046555975.1	JBKGLB000000000	SAMN46010663	23x1882	Citrobacter freundii
GCA_046555955.1	JBKGLA000000000	SAMN46010662	23x1768	Citrobacter freundii
GCA_046555935.1	JBKGLD000000000	SAMN46010665	23x1987	Citrobacter freundii
GCA_046555915.1	JBKGKZ000000000	SAMN46010661	23x1767	Citrobacter freundii
GCA_046555895.1	JBKGKO000000000	SAMN46010650	23x1029	Citrobacter freundii
GCA_046555875.1	JBKGLC000000000	SAMN46010664	23x1986	Citrobacter freundii
GCA_046555855.1	JBKGLH000000000	SAMN46010669	23x2182	Citrobacter freundii
GCA_046556175.1	JBKGLO000000000	SAMN46010676	23x4009	Citrobacter freundii
GCA_046556145.1	JBKGLS000000000	SAMN46010680	23x6397	Citrobacter freundii
GCA_046556135.1	JBKGLT000000000	SAMN46010681	23x6499	Citrobacter freundii
GCA_046556095.1	JBKGKV000000000	SAMN46010657	23x1590	Citrobacter freundii
GCA_046556075.1	JBKGKQ000000000	SAMN46010652	23x1361	Citrobacter freundii
GCA_046556055.1	JBKGKW000000000	SAMN46010658	23x1637	Citrobacter freundii
GCA_046556035.1	JBKGKX000000000	SAMN46010659	23x1641	Citrobacter freundii
GCA_046556495.1	JBKGMC000000000	SAMN46010690	8712	Citrobacter freundii
GCA_046556475.1	JBKGMI000000000	SAMN46010696	8954	Citrobacter freundii
GCA_046556455.1	JBKGKT000000000	SAMN46010655	23x1492	Citrobacter freundii
GCA_046556635.1	JBKGKM000000000	SAMN46010648	23x12684-1	Citrobacter freundii
GCA_046556595.1	JBKGKS000000000	SAMN46010654	23x1483	Citrobacter freundii
GCA_046556575.1	JBKGKN000000000	SAMN46010649	23x1026	Citrobacter freundii
GCA_046556555.1	JBKGKP000000000	SAMN46010651	23x1233	Citrobacter freundii
GCA_046556245.1	JBKGLJ000000000	SAMN46010671	23x2350	Citrobacter freundii
GCA_046556395.1	JBKGMT000000000	SAMN46010707	9982	Citrobacter freundii
GCA_046556375.1	JBKGLK000000000	SAMN46010672	23x2583	Citrobacter freundii
GCA_046556325.1	JBKGMU000000000	SAMN46010708	10041	Citrobacter freundii
GCA_046556315.1	JBKGML000000000	SAMN46010699	9243	Citrobacter freundii
GCA_046556295.1	JBKGLL000000000	SAMN46010673	23x1869	Citrobacter freundii
GCA_046555715.1	JBKGLV000000000	SAMN46010683	7406	Citrobacter freundii
GCA_046555495.1	JBKGMK000000000	SAMN46010698	9035	Citrobacter freundii
GCA_046555475.1	JBKGMB000000000	SAMN46010689	8200	Citrobacter freundii
GCA_046555655.1	JBKGLX000000000	SAMN46010685	4536	Citrobacter freundii
GCA_046555635.1	JBKGME000000000	SAMN46010692	8744	Citrobacter freundii
GCA_046555615.1	JBKGLQ000000000	SAMN46010678	23x6381	Citrobacter freundii
GCA_046555595.1	JBKGMF000000000	SAMN46010693	8758	Citrobacter freundii
GCA_046555755.1	JBKGLU000000000	SAMN46010682	6416	Citrobacter freundii
GCA_046555795.1	JBKGLN000000000	SAMN46010675	23x3989	Citrobacter freundii
GCA_046556655.1	JBKGKB000000000	SAMN46010637	23x11222	Citrobacter koseri
GCA_046556435.1	JBKGKI000000000	SAMN46010644	23x4647	Citrobacter koseri
GCA_046556895.1	JBKGKC000000000	SAMN46010638	23x11224	Citrobacter koseri
GCA_046556775.1	JBKGJZ000000000	SAMN46010635	23x8918	Citrobacter koseri
GCA_046556735.1	JBKGKG000000000	SAMN46010642	23x3374	Citrobacter koseri
GCA_046556695.1	JBKGJY000000000	SAMN46010634	23x8429	Citrobacter koseri
GCA_046556935.1	JBKGJX000000000	SAMN46010633	23x8009	Citrobacter koseri
GCA_046556975.1	JBKGJR000000000	SAMN46010627	23x4895	Citrobacter koseri
GCA_046559435.1	JBKGJQ000000000	SAMN46010626	23x2385	Citrobacter koseri
GCA_046559415.1	JBKGJP000000000	SAMN46010625	23x2268	Citrobacter koseri
GCA_046559455.1	JBKGHN000000000	SAMN46010571	23x7043	Citrobacter meridianamericanus
GCA_046559535.1	JBKGJF000000000	SAMN46010615	23x13100	Citrobacter portucalensis
GCA_046559605.1	JBKGJL000000000	SAMN46010621	23x12684-2	Citrobacter portucalensis
GCA_046558965.1	JBKGHS000000000	SAMN46010576	23x8708	Citrobacter portucalensis
GCA_046558935.1	JBKGIH000000000	SAMN46010591	23x11070	Citrobacter portucalensis
GCA_046557575.1	JBKGNB000000000	SAMN46010715	10402	Citrobacter portucalensis
GCA_046556415.1	JBKGMP000000000	SAMN46010703	9659	Citrobacter portucalensis
GCA_046556225.1	JBKGLM000000000	SAMN46010674	23x3888	Citrobacter portucalensis
GCA_046556115.1	JBKGLR000000000	SAMN46010679	23x6347	Citrobacter portucalensis
GCA_046555555.1	JBKGMH000000000	SAMN46010695	8949	Citrobacter portucalensis
GCA_046556615.1	JBKGKJ000000000	SAMN46010645	23x4648	Citrobacter sedlakii
GCA_046556675.1	JBKGKK000000000	SAMN46010646	23x4649	Citrobacter sedlakii
GCA_046555775.1	JBKGLW000000000	SAMN46010684	7451	Citrobacter sp. U14242
GCA_046559215.1	JBKGHQ000000000	SAMN46010574	23x7611	Citrobacter youngae
GCA_046559255.1	JBKGHW000000000	SAMN46010580	23x662	Citrobacter youngae
GCA_046558755.1	JBKGIU000000000	SAMN46010604	23x228	Citrobacter youngae
GCA_046558735.1	JBKGIV000000000	SAMN46010605	23x491	Citrobacter youngae
GCA_046558595.1	JBKGJE000000000	SAMN46010614	23x662	Citrobacter youngae
GCA_046557005.1	JBKGNF000000000	SAMN46010719	10049	Citrobacter youngae
GCA_046556915.1	JBKGJW000000000	SAMN46010632	23x7473	Citrobacter youngae
GCA_046556855.1	JBKGJV000000000	SAMN46010631	23x7472	Citrobacter youngae
GCA_046557115.1	JBKGNC000000000	SAMN46010716	10597-1	Citrobacter youngae
GCA_046557075.1	JBKGNH000000000	SAMN46010721	10597-2	Citrobacter youngae
GCA_046556195.1	JBKGLP000000000	SAMN46010677	23x489	Citrobacter youngae
GCA_046555575.1	JBKGMD000000000	SAMN46010691	8742	Citrobacter youngae

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Citrobacter from a hospital

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