ID 1090919 - BioProject

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Accession: PRJNA1090919 ID: 1090919

Microbiomes of ten diverse soil protists

Rhizosphere protists play a critical role in shaping the microbiome, and understanding their interactions with their associated bacteria may play roles in plant health. More...

Accession	PRJNA1090919
Data Type	Genome sequencing
Scope	Multispecies
Grants	"Defining the taxonomy, function, and plant health impact of protist-associated bacterial communities in the rhizosphere" (Grant ID 2022-67013-37144, Department of Agriculture-National Institute of Food and Agriculture)
Submission	Registration date: 22-Mar-2024 The Connecticut Agricultural Experiment Station
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	62
WGS master	7
Genomic DNA	55
SRA Experiments	47
Protein Sequences	145531
Other datasets
BioSample	95
Assembly	36

Assembly details:

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Assembly level

Number of Assemblies

28
1
7
36

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_044056765.1		2	SAMN43526780	UC81_30	Acidovorax delafieldii
GCA_044452305.1	JBIOAM000000000		SAMN43526790	UC242_57	Aeromicrobium sp. UC242_57
GCA_044056035.1		2	SAMN43526783	UC22_36	Aminobacter sp. UC22_36
GCA_044054585.1		6	SAMN43526806	UC242_113	Arthrobacter sp. UC242_113
GCA_044056015.1		10	SAMN43526801	UC48_102	Azospirillum melinis
GCA_042700715.1		1	SAMN43526781	UC22_33	Bosea sp. UC22_33
GCA_042701975.1		1	SAMN43526773	UC74_6	Burkholderiaceae bacterium UC74_6
GCA_044056025.1		2	SAMN43526785	UC70_42	Caulobacter sp. UC70_42
GCA_042699995.1		1	SAMN43526774	UC19_7	Cnuibacter sp. UC19_7
GCA_042695135.1		1	SAMN43526797	UC225_85	Epilithonimonas sp. UC225_85
GCA_042694625.1		1	SAMN43526792	UC225_62	Herbiconiux sp. UC225_62
GCA_042697355.1		1	SAMN43526787	UC242_50	Hydrogenophaga sp. UC242_50
GCA_042696965.1		1	SAMN43526788	UC242_53	Hydrogenophaga sp. UC242_53
GCA_044452255.1	JBIOAN000000000		SAMN43526789	UC242_56	Kaistia sp. UC242_56
GCA_044054595.1		2	SAMN43526805	UC22_110	Mesorhizobium sp. UC22_110
GCA_042701485.1		1	SAMN43526772	UC74_2	Mesorhizobium sp. UC74_2
GCA_044055385.1		3	SAMN43526802	UC48_103	Mesorhizobium terrae
GCA_044056775.1		3	SAMN43526779	UC81_27	Micrococcus luteus
GCA_042694155.1		1	SAMN43526798	UC70_90	Mucilaginibacter sp. UC70_90
GCA_044452285.1	JBIOAL000000000		SAMN43526791	UC225_61	Pedobacter sp. UC225_61
GCA_042698365.1		1	SAMN43526793	UC225_65	Pedobacter sp. UC225_65
GCA_042696275.1		1	SAMN43526782	UC22_34	Pimelobacter simplex
GCA_044452385.1	JBIOAO000000000		SAMN43526786	UC242_47	Polaromonas sp. UC242_47
GCA_044055365.1		2	SAMN43526804	UC29_106	Pseudoduganella sp. UC29_106
GCA_042693265.1		1	SAMN43526794	UC29_71	Pseudoduganella sp. UC29_71
GCA_044452245.1	JBIOAK000000000		SAMN43526796	UC29_74	Pseudomonas aeruginosa
GCA_044452225.1	JBIOAJ000000000		SAMN43526799	UC19_92	Pseudomonas aeruginosa
GCA_042700505.1		1	SAMN43526775	UC19_8	Pseudoxanthomonas sp. UC19_8
GCA_042697855.1		1	SAMN43526795	UC29_72	Pseudoxanthomonas sp. UC29_72
GCA_044452125.1	JBIOAI000000000		SAMN43526807	UC74_115	Rhodococcus baikonurensis
GCA_042695725.1		1	SAMN43526800	UC29_93	Roseateles sp. UC29_93
GCA_042699465.1		1	SAMN43526778	UC122_23	Sphingomonas leidyi
GCA_042701255.1		1	SAMN43526784	UC22_41	Tahibacter sp. UC22_41
GCA_042698915.1		1	SAMN43526776	UC19_11	Variovorax boronicumulans
GCA_044056785.1		3	SAMN43526777	UC122_21	Variovorax sp. UC122_21
GCA_044055375.1		2	SAMN43526803	UC74_104	Variovorax sp. UC74_104

SRA Data Details

Parameter	Value
Data volume, Gbases	82
Data volume, Mbytes	37523

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Microbiomes of ten diverse soil protists

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