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Accession: PRJNA1080603 ID: 1080603

Patagioenas fasciata (Band-tailed pigeon) genome, bPatFas1

See Genome Information for Patagioenas fasciata
The Band-tailed Pigeon (Patagioenas fasciata) is a member of the bird family Columbidae (doves and pigeons). It is a medium-sized species native to the Americas, with a breeding range extending from the west coast of the United States down to Mexico and Peru. The band-tailed pigeon is the closest living relative to the extinct passenger pigeon. This sample is from an individual of the subspecies P. f. monilis bred in captivity. It was sampled in Massapequa (NY) by Marine Reynaldo, coordinated by Ben Novak and Erich D. Jarvis, and supported by Revive & Restore to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Erich D. More...
AccessionPRJNA1080603
TypeUmbrella project
OrganismPatagioenas fasciata[Taxonomy ID: 372321]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Patagioenas; Patagioenas fasciata
SubmissionRegistration date: 26-Feb-2024
Vertebrate Genomes Project
RelevanceReference genome
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)36900
WGS master2
Transcript36326
SRA Experiments16
Protein Sequences33661
Publications
PubMed1
PMC1
Other datasets
BioSample8
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases501
Data volume, Tbytes0.27
This project encompasses the following 5 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
SRA or Trace
Total

3
2
5
BioProject
accession
Assembly
level
NameTitle
PRJNA1078808 ChromosomesPatagioenas fasciataPatagioenas fasciata (Band-tailed pigeon) genome, bPatFas1, haplotype 2 (Vertebrate Genomes Project)
PRJNA1078807 ChromosomesPatagioenas fasciataPatagioenas fasciata (Band-tailed pigeon) genome, bPatFas1, haplotype 1 (Vertebrate Genomes Project)
PRJNA1123650 ChromosomesPatagioenas fasciataPatagioenas fasciata isolate:bPatFas1 RefSeq Genome sequencing and assembly (NCBI)
PRJNA1144519 SRA or TracePatagioenas fasciata (Band-tailed pigeon) genome, bPatFas1, sequence dataPatagioenas fasciata (Band-tailed pigeon) genome, bPatFas1, sequence data (Vertebrate Genomes Project)
PRJNA1201220 SRA or TracePatagioenas fasciata (band-tailed pigeon) genome, bPatFas26, transcriptome dataPatagioenas fasciata (band-tailed pigeon) genome, bPatFas26, transcriptome data (Vertebrate Genomes Project)

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