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Genome Information for Scomber scombrus
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This project collects the sequencing data and assemblies generated for Scomber scombrus, common name Atlantic mackerel, to facilitate genome assembly and annotation as part of the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The data under this project are made available subject to the Darwin Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
| Accession | PRJEB69500 |
| Type | Umbrella project |
| Organism | Scomber scombrus[Taxonomy ID: 13677] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Pelagiaria; Scombriformes; Scombridae; Scomber; Scomber scombrus |
| Submission | Registration date: 16-Nov-2023
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 35073 |
| WGS master | 2 |
| Genomic DNA | 25 |
| Transcript | 34357 |
| SRA Experiments | 8 |
| Protein Sequences | 31217 |
| Other datasets |
| BioSample | 8 |
| Assembly | 2 |
fScoSco encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB70589 | Chromosomes | Scomber scombrus | Scomber scombrus (Atlantic mackerel) genome assembly, fScoSco1 (WELLCOME SANGER INSTITUTE) | | PRJEB70588 | Scaffolds | Scomber scombrus | Scomber scombrus (Atlantic mackerel) genome assembly, fScoSco1, alternate haplotype (WELLCOME SANGER INSTITUTE) | | PRJNA1066234 | Chromosomes | Scomber scombrus | Scomber scombrus (Atlantic mackerel) RefSeq BioProject (NCBI) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB69499 | Scomber scombrus | Scomber scombrus (Atlantic mackerel), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|