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Genome Information for Thomomys bottae
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Botta's pocket gopher (Thomomys bottae) is native to western North America. Botta's pocket gopher is highly adaptable, burrowing into a very diverse array of soils from loose sands to tightly packed clays, and from arid deserts to high altitude meadows. This sample is from a wild caught male in California, USA, collected by James L. Paton of the Museum of Vertebrate Zoology, and provided by Chris Conroy of the same museum, and used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL), coordinated by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA1015670 |
| Type | Umbrella project |
| Organism | Thomomys bottae[Taxonomy ID: 10013] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Geomyidae; Thomomys; Thomomys bottae |
| Submission | Registration date: 12-Sep-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 81 |
| WGS master | 2 |
| SRA Experiments | 25 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
2
1
3
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA1013538 | Chromosomes | Thomomys bottae | Thomomys bottae (Botta's pocket gopher), mThoBot2, haplotype 1 (Vertebrate Genomes Project) | | PRJNA1013537 | Chromosomes | Thomomys bottae | Thomomys bottae (Botta's pocket gopher), mThoBot2, haplotype 2 (Vertebrate Genomes Project) | | PRJNA1147606 | SRA or Trace | Thomomys bottae (Botta's pocket gopher) genome, mThoBot2, sequence data | Thomomys bottae (Botta's pocket gopher) genome, mThoBot2, sequence data (Vertebrate Genomes Project) |
|