Genome assembly Kleb_pneu_CHS93_V1
- NCBI RefSeq assembly
- GCF_001030995.1
- Submitted GenBank assembly
- GCA_001030995.1
- Taxon
- Klebsiella pneumoniae
- Strain
- CHS93
- WGS project
- LEVE01
- Submitter
- Broad Institute
- Date
- Jun 22, 2015
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.6 Mb | 5.6 Mb |
Total ungapped length | 5.6 Mb | 5.6 Mb |
Number of scaffolds | 17 | 17 |
Scaffold N50 | 4.7 Mb | 4.7 Mb |
Scaffold L50 | 1 | 1 |
Number of contigs | 37 | 37 |
Contig N50 | 507.1 kb | 507.1 kb |
Contig L50 | 4 | 4 |
GC percent | 57.5 | 57.5 |
Genome coverage | 133.0x | 133.0x |
Assembly level | Scaffold | Scaffold |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN03280236
- Submitter
- Broad Institute
- Strain
- CHS93
- Collection date
- 2014
- Geographic location
- USA
- Host
- Homo sapiens
- Sample name
- CHS93
- SRA
- SRS1011268
- Models
- Pathogen.cl
- Package
- Pathogen.cl.1.0
- Submission date
- 2015-01-09T11:31:57.697
- Publication date
- 2015-01-09T11:31:57.697
- Last updated
- 2015-07-25T10:10:37.177
Assembly methods
- Sequencing technology
- Illumina
- Comment
- Please be aware that the annotation is done automatically with little or no manual curation.
- Assembly method
- allpaths v. R48559
Additional genomes
Browse all Klebsiella pneumoniae genomes (80703)BioProject
PRJNA271899Sequencing of Carbapenem resistant bacteria Genome sequencing
Pathogen Detection Resource
Publications
RefSeq microbial genomes database: new representation and annotation strategy
T Tatusova, et al.
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | Broad Institute |
Name | GCF_001030995.1-RS_2025_01_05 | Annotation submitted by Broad Institute |
Date | Jan 5, 2025 | Jun 22, 2015 |
Genes | 5,561 | 5,384 |
Protein-coding | 5,334 | 5,288 |
Software version | 6.9 | |
View RefSeq annotation | View GenBank annotation |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 98.66% (53rd Percentile, dark blue bar)
Contamination: 0.21%
Completeness of Klebsiella pneumoniae RefSeq assemblies
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Klebsiella pneumoniae CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- derived_species_match
- Submitted organism name
- Klebsiella pneumoniae
- Submitted species name
- Klebsiella pneumoniae
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_000788015.1 | GCA_000788015.1 |
Organism name | Klebsiella pneumoniae subsp. pneumoniae | Klebsiella pneumoniae |
Type category | type | type |
ANI | 99.78% | 99.78% |
Assembly coverage | 95.25% | 95.25% |
Type assembly coverage | 92.66% | 92.66% |
Chromosomes
Note: This scaffold-level genome assembly includes 17 scaffolds and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_001030995.1 | GCF_001030995.1 | Kleb_pneu_CHS93_V1 | Scaffold | Jun 22, 2015 |