Genome assembly GRCz11reference
- NCBI RefSeq assembly
- GCF_000002035.6
- Submitted GenBank assembly
- GCA_000002035.4
- Taxon
- Danio rerio (zebrafish)
- Strain
- Tuebingen
- Synonym
- danRer11
- Assembly type
- haploid with alt loci
- Submitter
- Genome Reference Consortium
- Date
- May 9, 2017
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 1.4 Gb | 1.4 Gb |
Total ungapped length | 1.4 Gb | 1.4 Gb |
Gaps between scaffolds | 925 | 925 |
Number of chromosomes | 25 | 25 |
Number of organelles | 1 | 0 |
Number of scaffolds | 1,917 | 1,917 |
Scaffold N50 | 7.4 Mb | 7.4 Mb |
Scaffold L50 | 44 | 44 |
Number of contigs | 19,725 | 19,725 |
Contig N50 | 1.4 Mb | 1.4 Mb |
Contig L50 | 219 | 219 |
GC percent | 36.5 | 36.5 |
Assembly level | Chromosome | Chromosome |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN06930106
- Description
- Sample group for GRCz11
- Submitter
- Genome Reference Consortium
- Strain
- Tuebingen
- Note
- combined sample of SAMN03014687-SAMN03014693, SAMEA3146246, SAMEA3642453
- SRA
- ERS2108068
- GenBank
- GRCz11
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2017-05-11T15:30:03.223
- Publication date
- 2017-05-11T00:00:00.000
- Last updated
- 2017-09-30T00:32:18.060
Assembly methods
- Comment
Assembly Name: GRCz11 Primary Assembly
The GRCz11 sequence is composed of genomic sequence, primarily finished clones that were sequenced as part of Zebrafish Genome Project at the Wellcome Trust Sanger Institute. PCR products and WGS shotgun sequence from mainly the WGS31 assembly (CABZ00000000.1) but also WGS29 (CAAK00000000.1) and WGS32 (CZQB00000000.1) have been added where necessary to fill gaps. In addition, unplaced sequences from WGS31 were added if they featured at least 5 kb of non-repetitive sequence, or if alignments with a cDNA could be detected that were not already covered by the placed sequences. For more information see: https://genomereference.org.
Additional genomes
Browse all Danio rerio genomes (19)BioProject
PRJNA11776Genome sequence for Danio rerio (zebrafish), currently maintained by the Genome Reference Consortium (GRC)
Annotation details
See full annotation reportRefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_000002035.6-RS_2024_08 |
Date | Aug 15, 2024 |
Genes | 46,466 |
Protein-coding | 27,158 |
Software version | 10.3 |
Quality analysis
BUSCO analysis (5.7.1)
C:98.4%[S:96.9%,D:1.5%],F:0.9%,M:0.6%,n:3640
actinopterygii_odb10 (3640)
Chromosomes
Note: This genome assembly includes 967 unplaced scaffolds.
Revision history
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_000002035.4 | GCF_000002035.6 | GRCz11 | Chromosome | May 9, 2017 | |
GCA_000002035.3 | GCF_000002035.5 | GRCz10 | Chromosome | Sep 2, 2014 | |
GCA_000002035.2 | GCF_000002035.4 | Zv9 | Chromosome | Jul 15, 2010 | |
GCA_000002035.1 | GCF_000002035.3 | Zv8 | Chromosome | Jun 23, 2009 | |
GCA_000002035.1 | GCF_000002035.2 | Zv8 | Chromosome | Jun 23, 2009 | |
n/a | GCF_000002035.1 | Zv7 | Chromosome | Feb 1, 2008 |