Genome assembly ASM171662v1
- NCBI RefSeq assembly
- GCF_001716625.1
- Submitted GenBank assembly
- GCA_001716625.1
- Taxon
- Salmonella enterica subsp. enterica serovar Kentucky
- Strain
- ARS-CC8446
- WGS project
- MCPW01
- Submitter
- USDA
- Date
- Aug 29, 2016
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 4.8 Mb | 4.8 Mb |
Total ungapped length | 4.8 Mb | 4.8 Mb |
Number of contigs | 65 | 65 |
Contig N50 | 527.1 kb | 527.1 kb |
Contig L50 | 4 | 4 |
GC percent | 52 | 52 |
Genome coverage | 40.0x | 40.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMN05390909
- Description
- Pathogen: environmental/food/other sample from Salmonella enterica subsp. enterica serovar Kentucky
- Submitter
- USDA
- Strain
- ARS-CC8446
- Latitude and longitude
- not collected
- Collection date
- 2014
- Geographic location
- USA:OH
- Isolation source
- Milk filter (dairy cow farm)
- Serovar
- Kentucky
- Collected by
- USDA-ARS
- Sample number
- 29
- Host
- Bos taurus
- Sub species
- enterica
- Sample name
- ARS-CC8446
- SRA
- SRS1608034
- Models
- Pathogen.env
- Package
- Pathogen.env.1.0
- Submission date
- 2016-07-14T11:53:04.960
- Publication date
- 2016-08-12T00:00:00.000
- Last updated
- 2022-02-28T19:53:20.472
Assembly methods
- Sequencing technology
- Illumina NextSeq 500
- Comment
- Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.6.2
Additional genomes
Browse all Salmonella enterica genomes (582812)BioProject
PRJNA337914Salmonella enterica Genome sequencing and assembly
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | NCBI |
Name | GCF_001716625.1-RS_2024_12_28 | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Dec 28, 2024 | Aug 8, 2016 |
Genes | 4,711 | 4,654 |
Protein-coding | 4,477 | 4,477 |
Software version | 6.9 | 3.3 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 99.64% (68th Percentile)
Contamination: 0.98%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Salmonella enterica CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Salmonella enterica subsp. enterica serovar Kentucky
- Submitted species name
- Salmonella enterica
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_001558355.2 | GCA_001558355.2 |
Organism name | Salmonella enterica | Salmonella enterica |
Type category | type | type |
ANI | 98.73% | 98.73% |
Assembly coverage | 90.97% | 90.97% |
Type assembly coverage | 88.89% | 88.89% |
Chromosomes
Note: This contig-level genome assembly includes 65 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_001716625.1 | GCF_001716625.1 | ASM171662v1 | Contig | Aug 29, 2016 |