Genome assembly 7521_6#63
- NCBI RefSeq assembly
- GCF_900041815.1
- Submitted GenBank assembly
- GCA_900041815.1
- Taxon
- Staphylococcus aureus
- Strain
- BSAC1659
- WGS project
- FGNZ01
- Submitter
- SC
- Date
- Feb 17, 2016
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 2.8 Mb | 2.8 Mb |
Total ungapped length | 2.8 Mb | 2.8 Mb |
Number of contigs | 64 | 64 |
Contig N50 | 125.4 kb | 125.4 kb |
Contig L50 | 8 | 8 |
GC percent | 32.5 | 32.5 |
Genome coverage | 100.0x | 100.0x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMEA1464702
- Description
- 7521_6#63
- Submitter
- EBI
- ENA last update
- Feb 2, 2016
- ENA-CHECKLIST
- ERC000011
- ENA-FIRST-PUBLIC
- 2012-04-30T17:01:12Z
- ENA-LAST-UPDATE
- 2018-03-09T09:55:03Z
- External Id
- SAMEA1464702
- INSDC center name
- SC
- INSDC first public
- 2012-04-30T17:01:12Z
- INSDC last update
- 2018-03-09T09:55:03Z
- INSDC status
- public
- Submitter Id
- BSAC1659-sc-1304718
- Anonymized name
- 1304718
- Collection date
- 2007
- Geographic location
- United Kingdom: England
- Host health state
- disease
- Isolate
- EMRSA15
- Isolation source
- blood
- Sample name
- BSAC1659-sc-1304718
- Scientific name
- Staphylococcus aureus
- Host
- Homo sapiens
- Strain
- BSAC1659
- Supplier name
- st1659
- SRA
- ERS073234
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2012-05-15T13:06:20.253
- Publication date
- 2012-04-30T00:00:00.000
- Last updated
- 2024-02-05T18:31:38.000
Additional genomes
Browse all Staphylococcus aureus genomes (102274)BioProject
PRJEB2756Staphylococcus aureus (BSAC) study
Pathogen Detection Resource
Annotation details
RefSeq | GenBank | |
---|---|---|
Provider | NCBI RefSeq | SC |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) | Annotation submitted by SC |
Date | Dec 11, 2023 | Feb 17, 2016 |
Genes | 2,877 | 2,690 |
Protein-coding | 2,704 | 2,622 |
Software version | 6.6 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.2)
Completeness: 98.82% (91st Percentile)
Contamination: 0.39%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Staphylococcus aureus CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- species_match
- Submitted organism name
- Staphylococcus aureus
- Submitted species name
- Staphylococcus aureus
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_001544175.1 | GCA_001544175.1 |
Organism name | Staphylococcus aureus subsp. aureus NBRC 100910 | Staphylococcus aureus |
Type category | type | type |
ANI | 98.17% | 98.17% |
Assembly coverage | 90.04% | 90.04% |
Type assembly coverage | 93.82% | 93.82% |
Chromosomes
Note: This contig-level genome assembly includes 64 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_900041815.1 | GCF_900041815.1 | 7521_6#63 | Contig | Feb 17, 2016 |