Genome assembly ASM4553126v1
- Submitted GenBank assembly
- GCA_045531265.1
- Taxon
- Acutalibacteraceae bacterium
- Isolate
- T1900044596_TS20190062.MAGScoT_cleanbin_000041
- WGS project
- JAZSDP01
- Submitter
- University of Chinese Academy of Sciences
- Date
- Dec 2, 2024
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 2.2 Mb |
Total ungapped length | 2.2 Mb |
Number of contigs | 99 |
Contig N50 | 48.6 kb |
Contig L50 | 14 |
GC percent | 41.5 |
Genome coverage | 10.0x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN37890944
- Description
- MIMAG Metagenome-assembled Genome sample from Acutalibacteraceae bacterium
- Comment
- Keywords: GSC:MIxS;MIMAG:6.0
- Submitter
- University of Chinese Academy of Sciences
- Isolate
- T1900044596_TS20190062.MAGScoT_cleanbin_000041
- Collection date
- Aug 22, 2019
- Broad-scale environmental context
- Digestive tract enviroment
- Local-scale environmental context
- Intestinal
- Environmental medium
- fecal material
- Geographic location
- China: Lhasa
- Isolation source
- high altitude fresh fecal sample
- Latitude and longitude
- 30.49 N 91.14 E
- Host common name
- Tibetan Sheep
- Host
- Tibetan Sheep
- Relationship to oxygen
- anaerobe
- Sample collection device or method
- Fresh fecal
- Sample material processing
- freeze
- Sample size
- 5ml
- BioSamples containing similar MAGs
- SAMN34727379, SAMN34727379, SAMN34727390, SAMN34727395, SAMN34727399, SAMN34727399
- Derived from
- SAMN34727399
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- gut metagenome
- Sample name
- SGB_667
- Models
- MIMAG.host-associated
- Package
- MIMAG.host-associated.6.0
- Submission date
- 2023-10-20T04:42:12.400
- Publication date
- 2023-11-24T00:00:00.000
- Last updated
- 2023-11-24T22:38:52.896
Assembly methods
- Sequencing technology
- Complete Genomics
- Assembly method
- MEGAHIT v. 1.2.9
Additional genomes
Browse all Acutalibacteraceae bacterium genomes (1054)BioProject
PRJNA1030165Metagenomics study of the gut microbiome of high-altitude mammals
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Acutalibacteraceae bacterium
- Submitted species name
- Acutalibacteraceae bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_005601135.1 |
Organism name | n/a | Ruminococcus bovis |
Type category | n/a | type |
ANI | n/a | 85.37% |
Assembly coverage | n/a | 0.14% |
Type assembly coverage | n/a | 0.13% |
Chromosomes
Note: This contig-level genome assembly includes 99 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_045531265.1 | n/a | ASM4553126v1 | Contig | Dec 2, 2024 |