Genome assembly ASM4553126v1

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Submitted GenBank assembly
GCA_045531265.1
Taxon
Acutalibacteraceae bacterium
Isolate
T1900044596_TS20190062.MAGScoT_cleanbin_000041
WGS project
JAZSDP01
Submitter
University of Chinese Academy of Sciences
Date
Dec 2, 2024

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome
  • genus undefined

Assembly statistics

GenBank
Genome size2.2 Mb
Total ungapped length2.2 Mb
Number of contigs99
Contig N5048.6 kb
Contig L5014
GC percent41.5
Genome coverage10.0x
Assembly levelContig

Sample details

BioSample ID
SAMN37890944
Description
MIMAG Metagenome-assembled Genome sample from Acutalibacteraceae bacterium
Comment
Keywords: GSC:MIxS;MIMAG:6.0
Submitter
University of Chinese Academy of Sciences
Isolate
T1900044596_TS20190062.MAGScoT_cleanbin_000041
Collection date
Aug 22, 2019
Broad-scale environmental context
Digestive tract enviroment
Local-scale environmental context
Intestinal
Environmental medium
fecal material
Geographic location
China: Lhasa
Isolation source
high altitude fresh fecal sample
Latitude and longitude
30.49 N 91.14 E
Host common name
Tibetan Sheep
Host
Tibetan Sheep
Relationship to oxygen
anaerobe
Sample collection device or method
Fresh fecal
Sample material processing
freeze
Sample size
5ml
BioSamples containing similar MAGs
SAMN34727379, SAMN34727379, SAMN34727390, SAMN34727395, SAMN34727399, SAMN34727399
Derived from
SAMN34727399
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
gut metagenome
Sample name
SGB_667
Models
MIMAG.host-associated
Package
MIMAG.host-associated.6.0
Submission date
2023-10-20T04:42:12.400
Publication date
2023-11-24T00:00:00.000
Last updated
2023-11-24T22:38:52.896

Assembly methods

Sequencing technology
Complete Genomics
Assembly method
MEGAHIT v. 1.2.9

Additional genomes

Browse all Acutalibacteraceae bacterium genomes (1054)

BioProject

PRJNA1030165

Metagenomics study of the gut microbiome of high-altitude mammals

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Acutalibacteraceae bacterium
Submitted species name
Acutalibacteraceae bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_005601135.1
Organism name

n/a

Ruminococcus bovis
Type category

n/a

type
ANI

n/a

85.37%
Assembly coverage

n/a

0.14%
Type assembly coverage

n/a

0.13%

Chromosomes

Note: This contig-level genome assembly includes 99 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_045531265.1

n/a

ASM4553126v1ContigDec 2, 2024