Genome assembly E14__bin179

FTP
Actions
Submitted GenBank assembly
GCA_944384955.1
Taxon
Candidatus Gallacutalibacter stercoravium
Isolate
E14__bin179
WGS project
CALWVL01
Submitter
Institut National pour la Recherche Agronomique (FRANCE)
Date
Jun 30, 2022

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome

Assembly statistics

GenBank
Genome size2.8 Mb
Total ungapped length2.8 Mb
Number of contigs164
Contig N5026 kb
Contig L5034
GC percent51.5
Genome coverage10.0x
Assembly levelContig
View sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA110135549
Description
Metagenome-assembled genome: E14__bin179
Comment
This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542092,ERS4542093,ERS4542094,ERS4542095,ERS4542096,ERS4542097,ERS4542098,ERS4542099,ERS4542100,ERS4542101
Submitter
EBI
ENA-CHECKLIST
ERC000050
ENA-FIRST-PUBLIC
Jun 17, 2022
ENA-LAST-UPDATE
Jun 17, 2022
External Id
SAMEA110135549
INSDC center alias
INRA-META
INSDC center name
Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public
2022-06-17T16:20:25Z
INSDC last update
2022-06-17T16:20:25Z
INSDC status
public
Submitter Id
E14__bin179
Assembly quality
Many fragments with little to no review of assembly other than reporting of standard assembly statistics
Assembly software
SPAdes 3.15.3
Binning parameters
MetaBAT default parameters
Binning software
MetaBAT v2.12.1
Collection date
2016
Completeness score
93.88
Completeness software
checkm v1.1.3
Contamination score
0.67
Broad-scale environmental context
host-associated habitat
Local-scale environmental context
host-associated habitat
Environmental medium
caecal content
Geographic location
France
Geographic location (latitude)
48.8583
Geographic location (longitude)
2.2923
Geographic location (region and locality)
Jouy-en-Josas
Investigation type
metagenome-assembled genome
Isolation source
chicken caecal content
Metagenomic source
chicken gut metagenome
Project name
MetaChick
Sample derived from
ERS4542092,ERS4542093,ERS4542094,ERS4542095,ERS4542096,ERS4542097,ERS4542098,ERS4542099,ERS4542100,ERS4542101
Sample name
E14__bin179
Sequencing method
Illumina HiSeq 4000
Taxonomic identity marker
multi-marker approach
SRA
ERS12234369
Models
Generic
Package
Generic.1.0
Submission date
2022-06-18T09:31:34.883
Publication date
2022-06-17T00:00:00.000
Last updated
2022-06-20T20:25:53.000

Additional genomes

Browse all Candidatus Gallacutalibacter stercoravium genomes (2)

BioProject

PRJEB53581

Primary metagenome assemblies and Metagenome-Assembled Genomes of the MetaChick project

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Candidatus Gallacutalibacter stercoravium
Submitted species name
Candidatus Gallacutalibacter stercoravium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_016697365.1
Organism name

n/a

Acutalibacter muris
Type category

n/a

suspected_type
ANI

n/a

96.81%
Assembly coverage

n/a

0.02%
Type assembly coverage

n/a

0.01%

Chromosomes

Note: This contig-level genome assembly includes 164 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_944384955.1

n/a

E14__bin179ContigJun 30, 2022