Genome assembly E14__bin179
- Submitted GenBank assembly
- GCA_944384955.1
- Taxon
- Candidatus Gallacutalibacter stercoravium
- Isolate
- E14__bin179
- WGS project
- CALWVL01
- Submitter
- Institut National pour la Recherche Agronomique (FRANCE)
- Date
- Jun 30, 2022
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
Assembly statistics
GenBank | |
---|---|
Genome size | 2.8 Mb |
Total ungapped length | 2.8 Mb |
Number of contigs | 164 |
Contig N50 | 26 kb |
Contig L50 | 34 |
GC percent | 51.5 |
Genome coverage | 10.0x |
Assembly level | Contig |
View sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMEA110135549
- Description
- Metagenome-assembled genome: E14__bin179
- Comment
- This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542092,ERS4542093,ERS4542094,ERS4542095,ERS4542096,ERS4542097,ERS4542098,ERS4542099,ERS4542100,ERS4542101
- Submitter
- EBI
- ENA-CHECKLIST
- ERC000050
- ENA-FIRST-PUBLIC
- Jun 17, 2022
- ENA-LAST-UPDATE
- Jun 17, 2022
- External Id
- SAMEA110135549
- INSDC center alias
- INRA-META
- INSDC center name
- Institut National pour la Recherche Agronomique (FRANCE)
- INSDC first public
- 2022-06-17T16:20:25Z
- INSDC last update
- 2022-06-17T16:20:25Z
- INSDC status
- public
- Submitter Id
- E14__bin179
- Assembly quality
- Many fragments with little to no review of assembly other than reporting of standard assembly statistics
- Assembly software
- SPAdes 3.15.3
- Binning parameters
- MetaBAT default parameters
- Binning software
- MetaBAT v2.12.1
- Collection date
- 2016
- Completeness score
- 93.88
- Completeness software
- checkm v1.1.3
- Contamination score
- 0.67
- Broad-scale environmental context
- host-associated habitat
- Local-scale environmental context
- host-associated habitat
- Environmental medium
- caecal content
- Geographic location
- France
- Geographic location (latitude)
- 48.8583
- Geographic location (longitude)
- 2.2923
- Geographic location (region and locality)
- Jouy-en-Josas
- Investigation type
- metagenome-assembled genome
- Isolation source
- chicken caecal content
- Metagenomic source
- chicken gut metagenome
- Project name
- MetaChick
- Sample derived from
- ERS4542092,ERS4542093,ERS4542094,ERS4542095,ERS4542096,ERS4542097,ERS4542098,ERS4542099,ERS4542100,ERS4542101
- Sample name
- E14__bin179
- Sequencing method
- Illumina HiSeq 4000
- Taxonomic identity marker
- multi-marker approach
- SRA
- ERS12234369
- Models
- Generic
- Package
- Generic.1.0
- Submission date
- 2022-06-18T09:31:34.883
- Publication date
- 2022-06-17T00:00:00.000
- Last updated
- 2022-06-20T20:25:53.000
Additional genomes
Browse all Candidatus Gallacutalibacter stercoravium genomes (2)BioProject
PRJEB53581Primary metagenome assemblies and Metagenome-Assembled Genomes of the MetaChick project
Quality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Candidatus Gallacutalibacter stercoravium
- Submitted species name
- Candidatus Gallacutalibacter stercoravium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_016697365.1 |
Organism name | n/a | Acutalibacter muris |
Type category | n/a | suspected_type |
ANI | n/a | 96.81% |
Assembly coverage | n/a | 0.02% |
Type assembly coverage | n/a | 0.01% |
Chromosomes
Note: This contig-level genome assembly includes 164 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_944384955.1 | n/a | E14__bin179 | Contig | Jun 30, 2022 |