Genome assembly ASM1911953v1

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Submitted GenBank assembly
GCA_019119535.1
Taxon
Candidatus Blautia merdigallinarum
Isolate
ChiSxjej6B18-287
WGS project
DWWV01
Submitter
Quadram Institutte
Date
Jul 5, 2021

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from metagenome

Assembly statistics

GenBank
Genome size3.1 Mb
Total ungapped length3.1 Mb
Number of contigs204
Contig N5023.3 kb
Contig L5042
GC percent45.5
Genome coverage4828.4x
Assembly levelContig

Sample details

BioSample ID
SAMN15816815
Description
Microbe sample from Candidatus Blautia merdigallinarum
Submitter
Quadram Institute BioScience
Isolate
ChiSxjej6B18-287
Host
Gallus gallus
Collection date
not applicable
Geographic location
not applicable
GTDB organism name
Blautia merdigallinarum
NCBI LCA organism name
Blautia sp.
Metagenomic
1
Environmental-sample
1
Sample type
metagenomic assembly
Metagenome source
gut metagenome
Previous organism name
Blautia sp.
Derived from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323114
Source Metagenome BioSample
SAMN08009924
Source Metagenome Bioproject
PRJNA417359
Sample name
MB2bin177
Models
Microbe, viral or environmental
Package
Microbe.1.0
Submission date
2020-08-14T05:49:15.426
Publication date
2020-09-21T00:00:00.000
Last updated
2021-06-09T15:58:20.875

Assembly methods

Sequencing technology
Illumina HiSeq X Ten
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
MegaHIT v. 1.2.9

Additional genomes

Browse all Candidatus Blautia merdigallinarum genomes (2)

BioProject

PRJNA543206

Chicken metagenome Raw sequence reads

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateJun 9, 2021
Genes2,996
Protein-coding2,876
Software version5.2

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Candidatus Blautia merdigallinarum
Submitted species name
Candidatus Blautia merdigallinarum

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_001754075.1
Organism name

n/a

Merdimonas faecis
Type category

n/a

suspected_type
ANI

n/a

89.85%
Assembly coverage

n/a

2.17%
Type assembly coverage

n/a

2%

Chromosomes

Note: This contig-level genome assembly includes 204 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_019119535.1

n/a

ASM1911953v1ContigJul 5, 2021