Genome assembly ASM1911953v1
- Submitted GenBank assembly
- GCA_019119535.1
- Taxon
- Candidatus Blautia merdigallinarum
- Isolate
- ChiSxjej6B18-287
- WGS project
- DWWV01
- Submitter
- Quadram Institutte
- Date
- Jul 5, 2021
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from metagenome
Assembly statistics
GenBank | |
---|---|
Genome size | 3.1 Mb |
Total ungapped length | 3.1 Mb |
Number of contigs | 204 |
Contig N50 | 23.3 kb |
Contig L50 | 42 |
GC percent | 45.5 |
Genome coverage | 4828.4x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN15816815
- Description
- Microbe sample from Candidatus Blautia merdigallinarum
- Submitter
- Quadram Institute BioScience
- Isolate
- ChiSxjej6B18-287
- Host
- Gallus gallus
- Collection date
- not applicable
- Geographic location
- not applicable
- GTDB organism name
- Blautia merdigallinarum
- NCBI LCA organism name
- Blautia sp.
- Metagenomic
- 1
- Environmental-sample
- 1
- Sample type
- metagenomic assembly
- Metagenome source
- gut metagenome
- Previous organism name
- Blautia sp.
- Derived from
- This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323114
- Source Metagenome BioSample
- SAMN08009924
- Source Metagenome Bioproject
- PRJNA417359
- Sample name
- MB2bin177
- Models
- Microbe, viral or environmental
- Package
- Microbe.1.0
- Submission date
- 2020-08-14T05:49:15.426
- Publication date
- 2020-09-21T00:00:00.000
- Last updated
- 2021-06-09T15:58:20.875
Assembly methods
- Sequencing technology
- Illumina HiSeq X Ten
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- MegaHIT v. 1.2.9
Additional genomes
Browse all Candidatus Blautia merdigallinarum genomes (2)BioProject
PRJNA543206Chicken metagenome Raw sequence reads
Annotation details
GenBank | |
---|---|
Provider | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Jun 9, 2021 |
Genes | 2,996 |
Protein-coding | 2,876 |
Software version | 5.2 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Candidatus Blautia merdigallinarum
- Submitted species name
- Candidatus Blautia merdigallinarum
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_001754075.1 |
Organism name | n/a | Merdimonas faecis |
Type category | n/a | suspected_type |
ANI | n/a | 89.85% |
Assembly coverage | n/a | 2.17% |
Type assembly coverage | n/a | 2% |
Chromosomes
Note: This contig-level genome assembly includes 204 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_019119535.1 | n/a | ASM1911953v1 | Contig | Jul 5, 2021 |