Genome assembly ASM1334054v1
- NCBI RefSeq assembly
- GCF_013340545.1
- Submitted GenBank assembly
- GCA_013340545.1
- Taxon
- Enterobacter hormaechei (CDC Enteric Group 75)
- Strain
- TUM17942
- WGS project
- BLXA01
- Submitter
- Toho University
- Date
- Jun 5, 2020
Assembly statistics
RefSeq | GenBank | |
---|---|---|
Genome size | 5.1 Mb | 5.1 Mb |
Total ungapped length | 5.1 Mb | 5.1 Mb |
Number of contigs | 168 | 168 |
Contig N50 | 85.5 kb | 85.5 kb |
Contig L50 | 20 | 20 |
GC percent | 55 | 55 |
Genome coverage | 26.9x | 26.9x |
Assembly level | Contig | Contig |
View sequences | view RefSeq sequences | view GenBank sequences |
Sample details
- BioSample ID
- SAMD00229143
- Description
- Enterobacter hormaechei TUM17942
- Comment
- Keywords: GSC:MIxS;MIGS:6.0
- Submitter
- Toho University
- Sample name
- TUM17942
- Collection date
- 2015
- Host
- Homo sapiens
- Project name
- Draft whole-genome sequencing of IMP-producing Enterobacter cloacae complex
- Models
- MIGS.ba.human-associated
- Package
- MIGS.ba.human-associated.6.0
- Submission date
- 2020-05-23T01:00:43.390
- Publication date
- 2020-05-22T00:00:00.000
- Last updated
- 2022-04-04T05:35:42.000
Assembly methods
- Sequencing technology
- illumina MiSeq
- Comment
- Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp
- Assembly method
- SPAdes v. 3.13.0
Additional genomes
Browse all Enterobacter hormaechei genomes (8946)BioProject
PRJDB9939Draft whole-genome sequencing of IMP-producing Enterobacter cloacae complex
Pathogen Detection Resource
Annotation details
RefSeq | |
---|---|
Provider | NCBI RefSeq |
Name | GCF_013340545.1-RS_2024_09_10 |
Date | Sep 10, 2024 |
Genes | 5,081 |
Protein-coding | 4,874 |
Software version | 6.8 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
CheckM analysis (v1.2.3)
Completeness: 99.19% (32nd Percentile)
Contamination: 1.02%
Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).
Taxonomy check
- Taxonomy check status
- OK
- Best match status
- derived_species_match
- Submitted organism name
- Enterobacter hormaechei
- Submitted species name
- Enterobacter hormaechei
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | GCA_001729745.1 | GCA_001729745.1 |
Organism name | Enterobacter hormaechei subsp. hoffmannii | Enterobacter hormaechei |
Type category | suspected_type | suspected_type |
ANI | 99.14% | 99.14% |
Assembly coverage | 83.5% | 83.5% |
Type assembly coverage | 91.22% | 91.22% |
Chromosomes
Note: This contig-level genome assembly includes 168 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_013340545.1 | GCF_013340545.1 | ASM1334054v1 | Contig | Jun 5, 2020 |