Genome assembly ASM1334054v1

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NCBI RefSeq assembly
GCF_013340545.1
Submitted GenBank assembly
GCA_013340545.1
Taxon
Enterobacter hormaechei (CDC Enteric Group 75)
Strain
TUM17942
WGS project
BLXA01
Submitter
Toho University
Date
Jun 5, 2020

Assembly statistics

RefSeqGenBank
Genome size5.1 Mb5.1 Mb
Total ungapped length5.1 Mb5.1 Mb
Number of contigs168168
Contig N5085.5 kb85.5 kb
Contig L502020
GC percent5555
Genome coverage26.9x26.9x
Assembly levelContigContig
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMD00229143
Description
Enterobacter hormaechei TUM17942
Comment
Keywords: GSC:MIxS;MIGS:6.0
Submitter
Toho University
Sample name
TUM17942
Collection date
2015
Host
Homo sapiens
Project name
Draft whole-genome sequencing of IMP-producing Enterobacter cloacae complex
Models
MIGS.ba.human-associated
Package
MIGS.ba.human-associated.6.0
Submission date
2020-05-23T01:00:43.390
Publication date
2020-05-22T00:00:00.000
Last updated
2022-04-04T05:35:42.000

Assembly methods

Sequencing technology
illumina MiSeq
Comment
Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at D-FAST https://dfast.nig.ac.jp
Assembly method
SPAdes v. 3.13.0

Additional genomes

Browse all Enterobacter hormaechei genomes (8946)

BioProject

PRJDB9939

Draft whole-genome sequencing of IMP-producing Enterobacter cloacae complex

Pathogen Detection Resource

Annotation details

RefSeq
ProviderNCBI RefSeq
NameGCF_013340545.1-RS_2024_09_10
DateSep 10, 2024
Genes5,081
Protein-coding4,874
Software version6.8

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

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Quality analysis

CheckM analysis (v1.2.3)

Completeness: 99.19% (32nd Percentile)

Contamination: 1.02%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Enterobacter CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
derived_species_match
Submitted organism name
Enterobacter hormaechei
Submitted species name
Enterobacter hormaechei

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assemblyGCA_001729745.1GCA_001729745.1
Organism nameEnterobacter hormaechei subsp. hoffmanniiEnterobacter hormaechei
Type categorysuspected_typesuspected_type
ANI99.14%99.14%
Assembly coverage83.5%83.5%
Type assembly coverage91.22%91.22%

Chromosomes

Note: This contig-level genome assembly includes 168 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_013340545.1GCF_013340545.1ASM1334054v1ContigJun 5, 2020