Reset Context
Model
{
"search": {
"acc": "SAMD00808007"
},
"order": {
"acc_s": "a"
}
}Cfg
{
"version": "1.0.1",
"name": "run_selectorstudy",
"ph_debug_id": "id-ctx-ph",
"is_test_dir": false,
"hostname": "www",
"ras_url": "https://auth.ncbi.nlm.nih.gov/jwt/user/v2",
"ras_return": "sponomar",
"user_interface": {
"hide_google": true,
"hide_aws": true,
"hide_ras": true,
"hide_advertisment": true
},
"local_banner_url": "/Traces/banners-be/banner.html",
"rs": {
"solr_url": "/Traces/solr-proxy-be/solr-proxy-be.cgi?core=run_sel_index",
"solr_url_cache": "/Traces/solr-proxy-be/solr-proxy-be.cgi?core=run_sel_cache",
"dbgap_phs_url": "/Traces/run-selector-be/run-selector-be.cgi?",
"jwt_cart_url": "/Traces/jwt-cart-builder-be/jwt-cart-builder-be.cgi",
"wga_url": "//dbgap.ncbi.nlm.nih.gov/aa/wga.cgi",
"galaxy_url": "https://usegalaxy.org/tool_runner?tool_id=sra_source",
"cloud_delivery_url": "//www.ncbi.nlm.nih.gov/Traces/cloud-delivery",
"launcher_url": {
"gp": "cloud/google/index.html",
"s3": "cloud/aws/index.html"
},
"page_size": 50,
"fields_size": {
"min": 100,
"def": 150,
"max": 400,
"current": 150
},
"facet_threshold": {
"min": 5,
"def": 10,
"max": 100,
"current": 10
},
"max_selected_items_to_show": 50000,
"apply_search": false,
"fields": {
"datastore_provider_ss": {
"title": "DATASTORE provider",
"transform": "u",
"facet_number": 1
},
"datastore_region_ss": {
"title": "DATASTORE region",
"facet_number": 2
},
"datastore_filetype_ss": {
"title": "DATASTORE filetype",
"transform": "u",
"facet_number": 3
},
"acc_s": {
"link": "//trace.ncbi.nlm.nih.gov/Traces/sra?run=",
"transform": "u",
"title": "Run",
"number": 1,
"never_hide": true
},
"sra_study_s": {
"link": "//trace.ncbi.nlm.nih.gov/Traces/sra?study=",
"transform": "u"
},
"experiment_s": {
"link": "//www.ncbi.nlm.nih.gov/sra/",
"transform": "u"
},
"bioproject_s": {
"link": "//www.ncbi.nlm.nih.gov/bioproject/",
"transform": "u",
"number": 10
},
"biosample_s": {
"link": "//www.ncbi.nlm.nih.gov/biosample/",
"transform": "u",
"number": 20
},
"sample_acc_s": {
"link": "//www.ncbi.nlm.nih.gov/biosample?term=",
"transform": "u",
"hide": true
},
"sra_sample_s": {
"transform": "u"
},
"consent_s": {
"transform": "u",
"number": 30
},
"gap_accession_sam_ss": {
"number": 31
},
"libraryselection_s": {
"transform": "u"
},
"librarysource_s": {
"transform": "u"
},
"librarylayout_s": {
"transform": "u"
},
"platform_s": {
"transform": "u"
},
"submission_id_s": {
"transform": "u"
},
"assemblyname_s": {
"transform": "u"
},
"submission_id_run_s": {
"transform": "u"
},
"instrument_s": {
"transform": "c"
},
"bytes_l": {
"short": 1024
},
"bases_l": {
"short": 1000
},
"mbytes_l": {
"hide": true
},
"mbases_l": {
"hide": true
}
},
"stats": [
"bases_l",
"bytes_l"
],
"type_number": {
"std": 1000,
"run": 1001,
"sam": 1002
}
},
"selection": {
"key": {
"field": "acc_s",
"title": "Runs"
},
"num1": {
"field": "bytes_l",
"title": "Bytes",
"div": 1024,
"mul": 1
},
"num2": {
"field": "bases_l",
"title": "Bases",
"div": 1000,
"mul": 1
}
},
"mode": {
"wgmlst": {
"wgmlst_common_loci_l": {
"title": "common loci",
"number": 3
},
"wgmlst_allele_match_l": {
"title": "allele match",
"number": 4
},
"wgmlst_loci_not_in_query_l": {
"title": "loci not in query",
"number": 5
},
"wgmlst_loci_in_query_l": {
"title": "loci in query",
"number": 6
},
"wgmlst_allele_mismatch_l": {
"title": "allele mismatch",
"number": 7
},
"wgmlst_position_l": {
"title": "position",
"number": 2,
"sort": "asc"
}
}
}
}
- SRA-6532
- SRP000008
- PRJNA292477 - 12496 items
- SRP000007 - no facets
- SRP161735 - has region not for all records
- SAMN03874500 - only one run
- SAMN03874500, max_mismatches=3 - WGMLST example
- uids=3736601,3736600,3736597,3736596,3736595 - Entrez example, UIDs case
- Entrez example request for query_key sample
- SRR5366439,SRR7868057,SRR3307670 - not allowed, allowed and public records for Jon Doe
- public data in Amazon and Google cloud - PRJNA262923
- 5 accessions in Amazon and Google cloud
- 2520 project, image files
- drid=64740
-
JWT test
-
JWT prod test