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Taxonomy browser (Porphyromonas gingivalis)

Porphyromonas gingivalis

Taxonomy ID: 837 (for references in articles please use NCBI:txid837)
current name
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 emend. Hahnke et al. 2016
basionym:
Bacteroides gingivalis Coykendall et al. 1980
type strain of Bacteroides gingivalis: ATCC:33277, CCUG:25893, CCUG:25928, CIP:103683, DSM:20709, JCM:12257, NCTC:11834, personal::2561
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 22,193 16,532 62
Protein 211,936 169,108 -
Structure 161 72 -
Genome 1 1 -
Popset 15 15 -
Conserved Domains 4 3 -
GEO Datasets 595 434 -
PubMed Central 15,894 15,894 -
Gene 9,081 1 -
SRA Experiments 664 510 -
Protein Clusters 1,779 1,779 -
Identical Protein Groups 69,316 62,360 -
BioProject 152 98 -
BioSample 810 652 74
Assembly 116 96 -
PubChem BioAssay 188 184 -
Taxonomy 21 1 -

Comments and References:

Coykendall AL et al. (1980)
Coykendall, A.L., Kaczmarek, F.S., and Slots, J. "Genetic heterogeneity in Bacteroides asaccharolyticus (Holdeman and Moore 1970) Finegold and Barnes 1977 (Approved Lists, 1980) and proposal of Bacteroides gingivalis sp. nov. and Bacteroides macacae (Slots and Genco) comb. nov." Int. J. Syst. Bacteriol. (1980) 30:559-564. [No PubMed record available.]
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Shah HN & Collins MD (1988)
Shah H.N., and Collins M.D. "Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas." Int. J. Syst. Bacteriol., (1988) 38:128-131. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Porphyromonas gingivalis meta-databases BacDive
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 taxonomy/phylogenetic Encyclopedia of life
GOLD: 15 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Porphyromonas gingivalis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
42 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Porphyromonas gingivalis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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