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Taxonomy browser (Dehalococcoides mccartyi)

Dehalococcoides mccartyi

Taxonomy ID: 61435 (for references in articles please use NCBI:txid61435)
current name
Dehalococcoides mccartyi Loffler et al. 2013
type strain of Dehalococcoides mccartyi: personal::195, ATCC:BAA-2266, KCTC:15142
homotypic synonym:
Dehalococcoides mccartyi Löffler et al. 2013 emend. Nouioui et al. 2018, emended name 1) in [Nouioui I et al. (2018c)]
includes:
Dehalococcoides sp. 11a
Dehalococcoides sp. 11a5
Dehalococcoides sp. FL2
Dehalococcoides sp. enrichment culture clone CG3
NCBI BLAST name: GNS bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Dehalococcoides ethenogenes" Maymo-Gatell et al. 1997, effective name 2)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Chloroflexota; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,501 2,163 10
Protein 76,592 60,637 -
Structure 7 - -
Popset 5 5 -
Conserved Domains 1 1 -
GEO Datasets 218 58 -
PubMed Central 520 520 -
Gene 16,906 1,501 -
SRA Experiments 87 43 -
Protein Clusters 1,530 1,530 -
Identical Protein Groups 33,468 32,119 -
BioProject 63 44 -
BioSample 98 80 1
Datasets Genome 67 57 -
Taxonomy 14 1 -

Notes:

Comments and References:
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Loffler FE et al. (2013)
Loffler, F.E., Yan, J., Ritalahti, K.M., Adrian, L., Edwards, E.A., Konstantinidis, K.T., Muller, J.A., Fullerton, H., Zinder, S.H., and Spormann, A.M. "Dehalococcoides mccartyi gen. nov., sp. nov., obligate organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi." Int. J. Syst. Evol. Microbiol. (2013) 63:625-635. [Erratum: Int. J. Syst. Evol. Microbiol. (2015) 65:2015.]
Maymo-Gatell X et al. (1997)
Maymo-Gatell, X., Chien, Y., Gossett, J.M., and Zinder, S.H. "Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene." Science (1997) 276:1568-1571.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Dehalococcoides mccartyi meta-databases BacDive
6 records from this provider organism-specific BioCyc
GOLD: 18 Organisms organism-specific Genomes On Line Database
18 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Dehalococcoides mccartyi (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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