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Taxonomy browser (Sinorhizobium fredii)

Sinorhizobium fredii

Taxonomy ID: 380 (for references in articles please use NCBI:txid380)
current name
Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988
homotypic synonym:
Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988 emend. De Lajudie et al. 1994, emended name
Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988 emend. Kuzmanović et al. 2022, emended name in [Kuzmanović N et al. (2022)]
basionym:
Rhizobium fredii Scholla and Elkan 1984
type strain of Rhizobium fredii: ATCC:35423, CCUG:27877, DSM:5851, HAMBI:2075, ICMP:11139, IFO:14780, JCM:20967, BCCM/LMG:6217, NBRC:14780, NRRL:B-14241, NRRL:B-14594, USDA:205, personal::PRC 205
homotypic synonym:
Ensifer fredii (Scholla and Elkan 1984) Young 2003
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium; Sinorhizobium fredii group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 11,634 2,824 1,679
Protein 145,596 90,139 -
Structure 10 3 -
Popset 100 100 -
GEO Datasets 34 6 -
PubMed Central 744 744 -
Gene 35,031 1 -
SRA Experiments 253 61 -
Protein Clusters 6,289 6,289 -
Identical Protein Groups 88,147 79,180 -
BioProject 64 33 -
BioSample 332 80 4
Datasets Genome 43 25 -
Taxonomy 15 1 -

Comments and References:
Kuzmanović N et al. (2022), PubMed: abstract
Kuzmanović, N., Fagorzi, C., Mengoni, A., Lassalle, F., and diCenzo, G.C. "Taxonomy of Rhizobiaceae revisited: proposal of a new framework for genus delimitation." Int. J. Syst. Evol. Microbiol. (2022) 72(3):005243.
Chen WX et al. (1988)
Chen, W.X., Yan, G.H., and Li, J.L. "Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov." Int. J. Syst. Bacteriol. (1988) 38:392-397. [No PubMed record available.]
de Lajudie P et al. (1994)
de Lajudie, P., Willems, A., Pot, B., Dewettinck, D., Maestrojuan, G., Neyra, M., Collins, M.D., Dreyfus, B., Kersters, K., and Gillis, M. "Polyphasic taxonomy of rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov." Int. J. Syst. Bacteriol. (1994) 44:715-733. [No PubMed record available.]
ICSB Subcommittee on the Taxonomy of Agrobacterium and Rhizobium (1992)
ICSB, Subcommittee on the Taxonomy of Agrobacterium and Rhizobium "Minutes of the meeting, 10 December 1992, Cancun, Mexico." Int. J. Syst. Bacteriol. (1993) 43:622. (Note: the subcommittee does not endorse the genus Sinorhizobium Chen et al. 1988.) [No PubMed record available.]
Jarvis BDW et al. (1992)
Jarvis, B.D.W., Downer, H.L., and Young, J.P.W. "Phylogeny of fast-growing soybean-nodulating rhizobia supports synonymy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredii." Int. J. Syst. Bacteriol. (1992) 42:93-96.
Martens M et al. (2008)
Martens, M., Dawyndt, P., Coopman, R., Gillis, M., De Vos, P., and Willems, A. "Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)." Int. J. Syst. Evol. Microbiol. (2008) 58:200-214.
Scholla MH & Elkan GH (1984)
Scholla, M.H., and Elkan, G.H. "Rhizobium fredii sp. nov., a fast-growing species that effectively nodulates soybeans." Int. J. Syst. Bacteriol. (1984) 34:484-486. [No PubMed record available.]
Young JM (2003)
Young, J.M., "The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a junior synonym of Ensifer adhaerens Casida 1982. Is the combination 'Sinorhizobium adhaerens' (Casida 1982) Willems et al. 2002 legitimate? Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2003) 53:2107-2110. Published online 30 May 2003: DOI 10.1099/ijs.0.02665-0

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ensifer fredii meta-databases BacDive
Ensifer fredii (Scholla and Elkan 1984) Young 2003 taxonomy/phylogenetic Encyclopedia of life
GOLD: 19 Organisms organism-specific Genomes On Line Database
2 records from this provider culture/stock collections Global Catalogue of Microorganisms
20 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Sinorhizobium fredii | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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