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Taxonomy browser (Arabidopsis)

Arabidopsis

Taxonomy ID: 3701 (for references in articles please use NCBI:txid3701)
current name
Arabidopsis (DC.) Heynh., 1842
NCBI BLAST name: eudicots
Rank: genus
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Cardaminopsis Hayek
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 2,849,149 238
Protein 699,970 50
Structure 2,240 16
Genome 6 -
Popset 1,856 559
Conserved Domains 216 163
GEO Datasets 108,756 448
PubMed Central 147,078 147,067
Gene 85,293 -
HomoloGene 10,445 -
SRA Experiments 199,977 3,571
GEO Profiles 2,014,308 -
Protein Clusters 20,650 -
Identical Protein Groups 331,617 24
BioProject 9,669 218
BioSample 203,927 3,316
Assembly 291 -
PubChem BioAssay 215 7
Taxonomy 50 1

Comments and References:

FNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.
Flora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org
Al-Shehbaz IA 2012, doi:10.1002/tax.615002
Shehbaz IA. 2012. A generic and tribal synopsis of the Brassicaceae. Taxon 61(5): 931-954.
Al-Shehbaz IA et al. 2006, doi:10.1007/s00606-006-0415-z
Al-Shehbaz IA, Beilstein MA and Kellogg EA. 2006. Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview. Plant Systematics and Evolution 259: 89-120.
Warwick SI et al. 2006b
Warwick SI, Francis A and Al-Shehbaz IA. 2006. Brassicaceae: Species checklist and database on CD-Rom. Plant Systematics and Evolution 259(2-4): 249-258. DOI 10.1007/s00606-006-0422-0
O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0076079 organism-specific Genomes On Line Database
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Arabidopsis taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Arabidopsis taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Arabidopsis taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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