7P2E: Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin

PDB ID: 7P2EDownload
MMDB ID: 223963
PDB Deposition Date: 2021/7/5
Updated in MMDB: 2022/12
Experimental Method:
electron microscopy
Resolution: 2.4  Å
Source Organism:
Similar Structures:
Biological Unit for 7P2E: 32-meric; determined by author
Molecular Components in 7P2E
Label Count Molecule
Proteins (31 molecules)
1
28S Ribosomal Protein S2, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S24, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S5, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S6, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S7, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S9, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S10, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S11, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S12, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S14, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S15, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S16, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S17, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S18b, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S18c, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S21, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S22, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S23, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S25, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S26, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S27, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S28, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S29, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S31, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S33, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S34, Mitochondrial
Molecule annotation
1
28S Ribosomal Protein S35, Mitochondrial
Molecule annotation
1
Coiled-coil-helix-coiled-coil-helix Domain-containing Protein 1
Molecule annotation
1
Aurora Kinase A-interacting Protein
Molecule annotation
1
Pentatricopeptide Repeat Domain-containing Protein 3, Mitochondrial
Molecule annotation
1
Translation Initiation Factor If-3, Mitochondrial
(Gene symbol: MTIF3)
Molecule annotation
Nucleotide(1 molecule)
1
12S Mitochondrial rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (91 molecules)
1
1
NICOTINAMIDE-ADENINE-DINUCLEOTIDENICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
1
SPERMINESPERMINE
3
1
[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium[(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium
4
21
POTASSIUM IONPOTASSIUM ION
5
62
MAGNESIUM IONMAGNESIUM ION
6
1
ZINC IONZINC ION
7
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
8
1
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
9
1
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303