7OXY: Crystal structure of depupylase Dop in complex with Pup and AMP-PCP

PDB ID: 7OXYDownload
MMDB ID: 209451
PDB Deposition Date: 2021/6/23
Updated in MMDB: 2021/12
Experimental Method:
x-ray diffraction
Resolution: 1.65  Å
Source Organism:
Acidothermus cellulolyticus 11B▼
Similar Structures:
Biological Unit for 7OXY: dimeric; determined by author and by software (PISA)
Molecular Components in 7OXY
Label Count Molecule
Proteins (2 molecules)
1
Depupylase
Molecule annotation
1
Prokaryotic Ubiquitin-like Protein PUP
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
4
MAGNESIUM IONMAGNESIUM ION
2
5
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTERPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
4
4
ACETATE IONACETATE ION
5
3
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
6
2
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303