6GXC: Bacterial oligosaccharyltransferase PglB in complex with an inhibitory peptide and a reactive lipid-linked oligosaccharide analog

PDB ID: 6GXCDownload
MMDB ID: 168722
PDB Deposition Date: 2018/6/27
Updated in MMDB: 2018/11
Experimental Method:
x-ray diffraction
Resolution: 3.401  Å
Source Organism:
Similar Structures:
Biological Unit for 6GXC: dimeric; determined by author and by software (PISA)
Molecular Components in 6GXC
Label Count Molecule
Proteins (2 molecules)
1
Undecaprenyl-diphosphooligosaccharide--protein Glycotransferase
(Gene symbol: CLA_RS06255)
Molecule annotation
1
Gly-asp-gln-dab-ala-thr-ppn-gly
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
1
SODIUM IONSODIUM ION
3
1
2-(N-MORPHOLINO)-ETHANESULFONIC ACID2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
1
[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] [oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl] hydrogen phosphate[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl] [oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl] hydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303