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6BQC:
Cyclopropane fatty acid synthase from E. coli
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PDB ID:
6BQC
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MMDB ID:
164006
PDB Deposition Date:
2017/11/27
Updated in MMDB:
2019/12
Experimental Method:
x-ray diffraction
Resolution:
2.073 Å
Source Organism:
Escherichia coli
Similar Structures:
VAST+
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Biological Unit
Asymmetric Unit
Biological Unit for 6BQC: dimeric; determined by author
Molecular Graphic
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Interactions
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A
A: Cyclopropane-fatty-acyl-phospholipid synthase
1
CO3: CARBONATE ION
2
LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
A_1
A_1: Cyclopropane-fatty-acyl-phospholipid synthase
1
CO3: CARBONATE ION
2
LOP: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
3
GOL: GLYCEROL
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Format:
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 6BQC
Label
Count
Molecule
Proteins (2 molecules)
A
A_1
2
Cyclopropane-fatty-acyl-phospholipid Synthase
2 Proteins
SS Diagram
3D Domains
1
75
150
225
300
383
383 residues, click to see VAST similar structures.
helix 18-28
helix 47-54
helix 55-65
helix 73-83
helix 91-98
helix 124-132
helix 149-164
helix 181-189
helix 201-211
helix 247-257
helix 279-286
helix 295-302
helix 318-332
helix 342-361
strand 40-43
strand 67-70
strand 169-176
strand 191-199
strand 215-221
strand 231-237
strand 262-271
strand 306-315
strand 364-373
Domain 1 (1-140): click to see VAST similar structures
1
Domain 2 (141-275): click to see VAST similar structures
2
Domain 1 (276-362): click to see VAST similar structures
1
Domain 2 (363-383): click to see VAST similar structures
2
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Chemicals and Non-standard biopolymers (18 molecules)
1
2
CARBONATE ION
2
2
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
3
14
GLYCEROL
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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