5MC2: Crystal Structure of Gly278Asp mutant of Human Prolidase with Mn ions and GlyPro ligand

PDB ID: 5MC2Download
MMDB ID: 157401
PDB Deposition Date: 2016/11/9
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5MC2: dimeric; determined by author and by software (PISA)
Molecular Components in 5MC2
Label Count Molecule
Proteins (2 molecules)
2
Xaa-pro Dipeptidase
(Gene symbol: PEPD)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
2
SODIUM IONSODIUM ION
3
2
GLYCINEGLYCINE
4
2
PROLINEPROLINE
5
7
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303