5D1K: Crystal Structure of UbcH5B in Complex with the RING-U5BR Fragment of AO7

PDB ID: 5D1KDownload
MMDB ID: 133754
PDB Deposition Date: 2015/8/4
Updated in MMDB: 2015/12
Experimental Method:
x-ray diffraction
Resolution: 1.78  Å
Source Organism:
Similar Structures:
Biological Unit for 5D1K: dimeric; determined by author and by software (PISA)
Molecular Components in 5D1K
Label Count Molecule
Proteins (2 molecules)
1
Ubiquitin-conjugating Enzyme E2 D2
(Gene symbol: UBE2D2)
Molecule annotation
1
E3 Ubiquitin-protein Ligase Rnf25
(Gene symbol: RNF25)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
1
OXALATE IONOXALATE ION
4
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303