National Center for
Biotechnology Information

4V8P: T.thermophila 60S ribosomal subunit in complex with initiation factor 6

PDB ID:

4V8P Download

MMDB ID:

171089

PDB Deposition Date:

2011/9/14

Updated in MMDB:

2021/03

Experimental Method:

x-ray diffraction

Resolution:

3.52 Å

Source Organism:

Tetrahymena thermophila▼

Taxonomy

Molecule

Tetrahymena thermophila

A1, AA, AB, AC, AE, AF, AG, AH, AJ,
AK, AL, AM, AN, AO, AP, AQ, AT,
AU, AX, B2, B3, BA, BB, BC, BD,
BE, BF, BG, BH, BI, BJ, BK, BL,
BM, BN, BO, BP, BQ, BR, BS, BT,
BU, BV, BW, BX, BY, C2, C3, CA,
CB, CC, CD, CE, CF, CG, CH, CI,
CJ, CK, CL, CM, CN, CO, CP, CQ,
CR, CS, CT, CU, CV, CW, CX, CY,
D1, DA, DB, DC, DE, DF, DG, DH,
DJ, DK, DL, DM, DN, DO, DP, DQ,
DT, DU, DX, E2, E3, EA, EB, EC,
ED, EE, EF, EG, EH, EI, EJ, EK,
EL, EM, EN, EO, EP, EQ, ER, ES,
ET, EU, EV, EW, EX, EY, F1, FA,
FB, FC, FE, FF, FG, FH, FJ, FK,
FL, FM, FN, FO, FP, FQ, FT, FU,
FX, G2, G3, GA, GC, GD, GE, GF,
GG, GH, GJ, GK, GL, GM, GN, GO,
GP, GQ, GR, GS, GT, GU, GV, GW,
GX, GY, H1, HA, HB, HC, HE, HF,
HG, HH, HJ, HK, HL, HM, HN, HO,
HP, HQ, HT, HU, HX

Unassigned

GB, GI

Similar Structures:

Biological Unit for 4V8P: 46-meric; determined by author

Molecular Components in 4V8P
Label	Count	Molecule
Proteins (43 molecules)
AA	1	Ribosomal Protein L37
AB	1	Rpl39
AC	1	60S Ribosomal Protein L36a
AE	1	Rpl6
AF	1	Rpl14
AG	1	Rpl30
AH	1	Rpl35a
AJ	1	Translation Initiation Factor Eif-6, Putative Family Protein
AK	1	Ubiquitin-60s Ribosomal Protein L40
AL	1	Rpl34
AM	1	Ribosomal Protein L22
AN	1	Rpl27
AO	1	Rpl28
AP	1	Rpl38
AQ	1	60S Ribosomal Protein L36
AT	1	Rpl29
AU	1	Rpl13
AX	1	Rpl18a
BA	1	Rpl8
BB	1	Ribosomal Protein L3
BC	1	Rpl4
BD	1	60S Ribosomal Protein L11
BE	1	60S Ribosomal Protein L9
BF	1	Rpl7a
BG	1	Rplp0
BH	1	60S Ribosomal Protein L10
BI	1	60S Ribosomal Protein L13a
BJ	1	Rpl23
BK	1	60S Ribosomal Protein L27a
BL	1	Ribosomal Protein L15
BM	1	60S Ribosomal Protein L5
BN	1	Rpl18
BO	1	Rpl19
BP	1	60S Ribosomal Protein L21
BQ	1	Rpl17
BR	1	Rpl23a
BS	1	Rpl26
BT	1	Rpl24
BU	1	Rpl35
BV	1	60S Ribosomal Protein L7
BW	1	60S Ribosomal Protein L31
BX	1	60S Ribosomal Protein L32
BY	1	Rpl37a
Nucleotides(3 molecules)
A1	1	26S rRNA
B2	1	5.8s rRNA
B3	1	5S rRNA
Chemicals and Non-standard biopolymers (152 molecules)
1	147	MAGNESIUM ION
2	5	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303