National Center for
Biotechnology Information

4UJD: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

PDB ID:

4UJD Download

MMDB ID:

170920

PDB Deposition Date:

2014/6/18

Updated in MMDB:

2024/10

Experimental Method:

electron microscopy

Resolution:

8.9 Å

Source Organism:

Hepacivirus hominis▼

Taxonomy	Molecule
Hepacivirus hominis	BC
Oryctolagus cuniculus	A2, A3, A4, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, At, Au, BA, BB, C1, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK, CL, CM, CN, CO, CP, CQ, CR, CS, CT, CU, CV, CW, CX, CY, CZ, Ca, Cb, Cc, Cd, Ce, Cf, Cg

Similar Structures:

Entry 4UPY is obsolete, it has been replaced with 4UJD.

Asymmetric Unit for 4UJD: 83-meric; determined by software (PISA)

Molecular Components in 4UJD
Label	Count	Molecule
Proteins (77 molecules)
AA	1	60S Ribosomal Protein L8
AB	1	60S Ribosomal Protein L3
AC	1	60S Ribosomal Protein L4
AD	1	60S Ribosomal Protein L5
AE	1	60S Ribosomal Protein L6
AF	1	60S Ribosomal Protein L7
AG	1	60S Ribosomal Protein L7A
AH	1	60S Ribosomal Protein L9
AI	1	60S Ribosomal Protein L10
AJ	1	60S Ribosomal Protein L11
AL	1	60S Ribosomal Protein L13
AM	1	60S Ribosomal Protein L14
AN	1	60S Ribosomal Protein L15
AO	1	60S Ribosomal Protein L13a
AP	1	60S Ribosomal Protein L17
AQ	1	60S Ribosomal Protein L18
AR	1	60S Ribosomal Protein L19
AS	1	60S Ribosomal Protein L18a
AT	1	60S Ribosomal Protein L21
AU	1	60S Ribosomal Protein L22
AV	1	60S Ribosomal Protein L23
AW	1	60S Ribosomal Protein L24
AX	1	60S Ribosomal Protein L23a
AY	1	60S Ribosomal Protein L26
AZ	1	60S Ribosomal Protein L27
Aa	1	60S Ribosomal Protein L27a
Ab	1	60S Ribosomal Protein L29
Ac	1	60S Ribosomal Protein L30
Ad	1	60S Ribosomal Protein L31
Ae	1	60S Ribosomal Protein L32
Af	1	60S Ribosomal Protein L35a
Ag	1	60S Ribosomal Protein L34
Ah	1	60S Ribosomal Protein L35
Ai	1	60S Ribosomal Protein L36
Aj	1	60S Ribosomal Protein L37
Ak	1	60S Ribosomal Protein L38
Al	1	60S Ribosomal Protein L39
Am	1	Ubiquitin-60s Ribosomal Protein L40
An	1	60S Ribosomal Protein L41
Ao	1	60S Ribosomal Protein L36a
Ap	1	60S Ribosomal Protein L37a
At	1	60S Ribosomal Protein L28
Au	1	60S Ribosomal Protein L10a
BB	1	Eif5b
CA	1	40S Ribosomal Protein US2
CB	1	40S Ribosomal Protein ES1
CC	1	40S Ribosomal Protein US5
CD	1	40S Ribosomal Protein US3
CE	1	40S Ribosomal Protein ES4
CF	1	40S Ribosomal Protein US7
CG	1	40S Ribosomal Protein ES6
CH	1	40S Ribosomal Protein ES7
CI	1	40S Ribosomal Protein ES8
CJ	1	40S Ribosomal Protein US4
CK	1	40S Ribosomal Protein Es10
CL	1	40S Ribosomal Protein Us17
CM	1	40S Ribosomal Protein Es12
CN	1	40S Ribosomal Protein Es15
CO	1	40S Ribosomal Protein Es11
CP	1	40S Ribosomal Protein Us19
CQ	1	40S Ribosomal Protein US9
CR	1	40S Ribosomal Protein Es17
CS	1	40S Ribosomal Protein Us13
CT	1	40S Ribosomal Protein Es19
CU	1	40S Ribosomal Protein Us10
CV	1	40S Ribosomal Protein Es21
CW	1	40S Ribosomal Protein US8
CX	1	40S Ribosomal Protein Us12
CY	1	40S Ribosomal Protein Es24
CZ	1	40S Ribosomal Protein Es25
Ca	1	40S Ribosomal Protein Es26
Cb	1	40S Ribosomal Protein Es27
Cc	1	40S Ribosomal Protein Es28
Cd	1	40S Ribosomal Protein Us14
Ce	1	40S Ribosomal Protein Es30
Cf	1	40S Ribosomal Protein Es31
Cg	1	40S Ribosomal Protein Rack1
Nucleotides(6 molecules)
A2	1	28S Ribosomal RNA
A3	1	5.8s Ribosomal RNA
A4	1	5S Ribosomal RNA
BA	1	tRNA
BC	1	Hcv-ires
C1	1	18S Ribosomal RNA
Chemicals and Non-standard biopolymers (2 molecules)
1	1	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303