3SDX: Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr In Complex With Cd1d-Beta-Galactosylceramide

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PDB ID: 3SDXDownload
MMDB ID: 94058
PDB Deposition Date: 2011/6/9
Updated in MMDB: 2011/10
Experimental Method:
x-ray diffraction
Resolution: 3.12  Å
Source Organism:
Similar Structures:
Biological Unit for 3SDX: tetrameric; determined by author
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3SDX: Crystal Structure Of Human Autoreactive-Valpha24 Nkt Tcr In Complex With Cd1d-Beta-Galactosylceramide
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Interactions?
AA: ANTIGEN-PRESENTING GLYCOPROTEIN CD1DBB: BETA-2-MICROGLOBULINEE: NKT TCR VALPHA24 CHAINFF: NKT TCR AUTOREACTIVE-VBETA11 CHAIN1GCY: N-[(2s,3r)-1-(beta-d-galactopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]tetracosanamide
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Data Set:
Molecular Components in 3SDX
Label Count Molecule
Proteins (4 molecules)
1
Antigen-presenting Glycoprotein Cd1d
(Gene symbol: CD1D)
1 Protein
SS Diagram
3D Domains
150100150200250275275 residues, click to see VAST similar structures.helix 55-75helix 76-83helix 136-144helix 147-158helix 159-172strand 4-15strand 17-28strand 29-37strand 42-45strand 88-101strand 103-114strand 115-123strand 124-129strand 180-189strand 196-207strand 211-218strand 219-222strand 225-228strand 230-234strand 236-247strand 254-260strand 267-272Domain 1 (1-176): click to see VAST similar structures1Domain 2 (177-275): click to see VAST similar structures2
1
Beta-2-microglobulin
(Gene symbol: B2M)
1 Protein
SS Diagram
1509999 residues, click to see VAST similar structures.strand 3-12strand 20-31strand 35-42strand 43-46strand 49-52strand 54-58strand 60-71strand 77-84strand 90-95
1
NKT TCR Valpha24 Chain
1 Protein
SS Diagram
3D Domains
150100150204204 residues, click to see VAST similar structures.strand 2-6strand 8-14strand 15-25strand 30-38strand 43-50strand 54-59strand 60-68strand 69-80strand 84-94strand 99-104strand 106-113strand 119-126strand 136-141strand 155-159strand 160-167strand 168-173strand 174-179Domain 1 (1-116): click to see VAST similar structures1Domain 2 (117-204): click to see VAST similar structures2
1
NKT TCR Autoreactive-vbeta11 Chain
1 Protein
SS Diagram
3D Domains
150100150200247247 residues, click to see VAST similar structures.helix 134-141strand 2-7strand 9-14strand 15-18strand 19-27strand 30-38strand 43-51strand 54-58strand 64-68strand 72-78strand 79-82strand 86-96strand 104-109strand 111-118strand 124-133strand 142-154strand 157-165strand 166-169strand 172-176strand 179-183strand 189-201strand 209-220strand 233-244Domain 1 (1-121): click to see VAST similar structures1Domain 2 (122-247): click to see VAST similar structures2
Chemical and Non-standard biopolymers (1 molecule)
1
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