3M9M: Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion

PDB ID: 3M9MDownload
MMDB ID: 82825
PDB Deposition Date: 2010/3/22
Updated in MMDB: 2017/11
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3M9M: trimeric; determined by author and by software (PISA)
Molecular Components in 3M9M
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*ap*ap*g)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*tp*gp*gp*cp*tp*tp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
CYTIDINE-5'-TRIPHOSPHATECYTIDINE-5'-TRIPHOSPHATE
2
4
CALCIUM IONCALCIUM ION
3
3
GLYCEROLGLYCEROL
4
1
CisplatinCisplatin
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303