3H8R: Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system

PDB ID: 3H8RDownload
MMDB ID: 81092
PDB Deposition Date: 2009/4/29
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 1.77  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3H8R: trimeric; determined by author and by software (PISA)
Molecular Components in 3H8R
Label Count Molecule
Protein (1 molecule)
1
Alpha-ketoglutarate-dependent Dioxygenase Alkb Homolog 2
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*cp*tp*gp*tp*ap*tp*(2yr)p*ap*tp*(6ma)p*gp*cp*g)-3'
Molecule annotation
1
5'-d(*tp*cp*gp*cp*tp*ap*tp*ap*ap*tp*ap*cp*a)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
GLYCEROLGLYCEROL
2
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
1
Molecule information is not available.
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303