3DY3: Crystal structure of yeast 20S proteasome in complex with the epimer form of spirolactacystin

PDB ID: 3DY3Download
MMDB ID: 67757
PDB Deposition Date: 2008/7/25
Updated in MMDB: 2008/11
Experimental Method:
x-ray diffraction
Resolution: 2.81  Å
Source Organism:
Similar Structures:
Biological Unit for 3DY3: 28-meric; determined by author and by software (PISA)
Molecular Components in 3DY3
Label Count Molecule
Proteins (28 molecules)
2
Proteasome Component Y7
(Gene symbol: PRE8)
Molecule annotation
2
Proteasome Component Y13
(Gene symbol: PRE9)
Molecule annotation
2
Proteasome Component Pre6
(Gene symbol: PRE6)
Molecule annotation
2
Proteasome Component Pup2
(Gene symbol: PUP2)
Molecule annotation
2
Proteasome Component Pre5
(Gene symbol: PRE5)
Molecule annotation
2
Proteasome Component C1
(Gene symbol: PRE10)
Molecule annotation
2
Proteasome Component C7-alpha
(Gene symbol: SCL1)
Molecule annotation
2
Proteasome Component Pup1
(Gene symbol: PUP1)
Molecule annotation
2
Proteasome Component Pup3
(Gene symbol: PUP3)
Molecule annotation
2
Proteasome Component C11
(Gene symbol: PRE1)
Molecule annotation
2
Proteasome Component Pre2
(Gene symbol: PRE2)
Molecule annotation
2
Proteasome Component C5
(Gene symbol: PRE7)
Molecule annotation
2
Proteasome Component Pre4
(Gene symbol: PRE4)
Molecule annotation
2
Proteasome Component Pre3
(Gene symbol: PRE3)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
(3R,4R)-3-hydroxy-2-[(1S)-1-hydroxy-2-methylpropyl]-4-methyl-5-oxo-D-proline(3R,4R)-3-hydroxy-2-[(1S)-1-hydroxy-2-methylpropyl]-4-methyl-5-oxo-D-proline
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303