2YBB: Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)

PDB ID: 2YBBDownload
MMDB ID: 94393
PDB Deposition Date: 2011
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 19  Å
Source Organism:
Escherichia coli BL21
Similar Structures:
Biological Unit for 2YBB: 48-meric; determined by author and by software (PISA)
Molecular Components in 2YBB
Label Count Molecule
Proteins (48 molecules)
1
Nadh-quinone Oxidoreductase Subunit 1
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 2
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 3
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 4
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 5
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 6
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 15
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit 9
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 1, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
Molecule annotation
2
Cytochrome B
Molecule annotation
2
Cytochrome C1, Heme Protein, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 7
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 8
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 6, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 9
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 10
Molecule annotation
1
Cytochrome C Oxidase Subunit 1
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
Molecule annotation
1
Cytochrome C Oxidase Subunit 4 Isoform 1, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 5B, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Polypeptide Via, Cytochrome C Oxidase Polypeptide VB
Molecule annotation
1
Cytochrome C Oxidase Subunit 6B1
Molecule annotation
1
Cytochrome C Oxidase Subunit 6C
Molecule annotation
1
Cytochrome C Oxidase Subunit 7a1, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 7B, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 7C, Mitochondrial
Molecule annotation
1
Cytochrome C Oxidase Subunit 8B, Mitochondrial
Molecule annotation
1
Cytochrome C
Molecule annotation
1
Nadh\: Ubiquinone Oxidoreductase, Membrane Subunit L,
Molecule annotation
1
Nadh\: Ubiquinone Oxidoreductase, Membrane Subunit M,
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit N
Molecule annotation
1
Nadh-quinone Oxidoreductase Subunit K
Molecule annotation
Chemicals and Non-standard biopolymers (42 molecules)
7
IRON/SULFUR CLUSTER (Link to PubChem not yet available)IRON/SULFUR CLUSTER
1
FLAVIN MONONUCLEOTIDE (Link to PubChem not yet available)FLAVIN MONONUCLEOTIDE
1
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE (Link to PubChem not yet available)1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
7
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
4
FE2/S2 (INORGANIC) CLUSTER (Link to PubChem not yet available)FE2/S2 (INORGANIC) CLUSTER
1
CALCIUM ION (Link to PubChem not yet available)CALCIUM ION
5
PROTOPORPHYRIN IX CONTAINING FE (Link to PubChem not yet available)PROTOPORPHYRIN IX CONTAINING FE
2
STIGMATELLIN A (Link to PubChem not yet available)STIGMATELLIN A
2
UBIQUINONE-1 (Link to PubChem not yet available)UBIQUINONE-1
2
HEME C (Link to PubChem not yet available)HEME C
4
CARDIOLIPIN (Link to PubChem not yet available)CARDIOLIPIN
2
HEME-A (Link to PubChem not yet available)HEME-A
3
COPPER (II) ION (Link to PubChem not yet available)COPPER (II) ION
1
ZINC ION (Link to PubChem not yet available)ZINC ION
* Click molecule labels to explore molecular sequence information.

Citing MMDB