2IBK: Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap

PDB ID: 2IBKDownload
MMDB ID: 58970
PDB Deposition Date: 2006/9/11
Updated in MMDB: 2012/10
Experimental Method:
x-ray diffraction
Resolution: 2.25  Å
Source Organism:
Saccharolobus solfataricus P2▼
Similar Structures:
Biological Unit for 2IBK: trimeric; determined by author
Molecular Components in 2IBK
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase IV
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*ap*t)-3'
Molecule annotation
1
5'-d(*tp*cp*ap*tp*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
2
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
3
1
GLYCEROLGLYCEROL
4
2
CALCIUM IONCALCIUM ION
5
1
PYROPHOSPHATE 2-PYROPHOSPHATE 2-
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303