|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-369 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 647.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 5 MRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLH 84
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 85 ANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQW 164
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 165 LWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 245 LFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 55979249 325 LFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPI 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
12-374 |
8.15e-120 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 352.17 E-value: 8.15e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 12 LKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFM 91
Cdd:COG1290 20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 92 FICLYCHIGRGLYYGSY-----FNveaWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLW 166
Cdd:COG1290 100 FAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 167 GGFSVDNATLTRFFAF-HFCFPFLIAGLAIVHLLFLHQTGANNPTG----LVGDTDKVPFHTYFSYKDVVGFVVLFTGLV 241
Cdd:COG1290 177 GGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 242 MVALFFPNLltDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFR 319
Cdd:COG1290 257 LLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 55979249 320 PLAQILFWVIVINVLLLTWLGGQPVeyPYIFLGQVASFFYFFNLLLLIPIVGLVE 374
Cdd:COG1290 335 PVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
1.57e-83 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 252.67 E-value: 1.57e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 10 PLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 90 FMFICLYCHIGRGLYYGSYFN--VEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 55979249 168 GFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGAN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
9.11e-76 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 232.66 E-value: 9.11e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 19 FVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFMFICLYCH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 99 IGRGLYYGSYFN--VEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSVDNATL 176
Cdd:pfam00033 81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 55979249 177 TRFFAFHFCFPFLIAGLAIVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
259-340 |
1.48e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNF-RPLAQILFwviVINVLLLT 337
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF---LFGTVVAL 141
|
...
gi 55979249 338 WLG 340
Cdd:TIGR01156 142 WLG 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00191 |
cytochrome b; Provisional |
5-369 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 647.74 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 5 MRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLH 84
Cdd:MTH00191 1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 85 ANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQW 164
Cdd:MTH00191 81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 165 LWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 245 LFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQI 324
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 55979249 325 LFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPI 369
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 641.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00119 1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00119 81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELL 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKML 378
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 625.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00074 1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00074 81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELL 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLL 378
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
5-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 623.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 5 MRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLH 84
Cdd:MTH00131 4 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLH 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 85 ANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQW 164
Cdd:MTH00131 84 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 165 LWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVA 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLA 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 245 LFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQI 324
Cdd:MTH00131 244 LFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQF 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 55979249 325 LFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELL 378
Cdd:MTH00131 324 LFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKAL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
2-379 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 617.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 2 AGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLR 81
Cdd:MTH00034 1 TGPLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 82 NLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPEL 161
Cdd:MTH00034 81 NIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 162 VQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLV 241
Cdd:MTH00034 161 VQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 242 MVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPL 321
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 55979249 322 AQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELLF 379
Cdd:MTH00034 321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
4-378 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 612.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 4 PMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNL 83
Cdd:MTH00100 3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 84 HANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQ 163
Cdd:MTH00100 83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 164 WLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMV 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 244 ALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQ 323
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 55979249 324 ILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELL 378
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-380 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 596.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00145 1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00145 81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASfFYFFNLLLLIPIVGLVENELLFK 380
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFT-VLYFLFFLILPLVQKLWDNILDY 379
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
12-354 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 594.07 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 12 LKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFM 91
Cdd:MTH00156 1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 92 FICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSV 171
Cdd:MTH00156 81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 172 DNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVALFFPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 252 TDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQILFWVIVI 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320
|
330 340
....*....|....*....|...
gi 55979249 332 NVLLLTWLGGQPVEYPYIFLGQV 354
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQI 343
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-354 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 562.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00016 1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00016 81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320
|
330 340 350
....*....|....*....|....*....|....
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQV 354
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
4-380 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 511.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 4 PMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNL 83
Cdd:MTH00022 2 PLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 84 HANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQ 163
Cdd:MTH00022 82 HANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 164 WLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMV 243
Cdd:MTH00022 162 WVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 244 ALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQ 323
Cdd:MTH00022 242 VYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGR 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 55979249 324 ILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELLFK 380
Cdd:MTH00022 322 MAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLFK 378
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-378 |
3.55e-174 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 489.99 E-value: 3.55e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00053 1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00053 81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVASFFYFFNLLLLIPIVGLVENELL 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLL 378
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-354 |
1.21e-172 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 485.97 E-value: 1.21e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 1 MAGPMRKHHPLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLL 80
Cdd:MTH00224 1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 81 RNLHANGASFMFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPE 160
Cdd:MTH00224 81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 161 LVQWLWGGFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 241 VMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320
|
330 340 350
....*....|....*....|....*....|....
gi 55979249 321 LAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQV 354
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
11-375 |
1.33e-132 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 384.67 E-value: 1.33e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 11 LLKVVNhSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASF 90
Cdd:MTH00033 8 LLEPVN-DIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 91 MFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFS 170
Cdd:MTH00033 87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 171 VDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVAL--FFP 248
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 249 NLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQILFWV 328
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 55979249 329 IVINVLLLTWLGGQPV-EYPYIFLGQVASFFYFFNLLLLIPIVGLVEN 375
Cdd:MTH00033 327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
12-374 |
8.15e-120 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 352.17 E-value: 8.15e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 12 LKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFM 91
Cdd:COG1290 20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 92 FICLYCHIGRGLYYGSY-----FNveaWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLW 166
Cdd:COG1290 100 FAAVYLHMFRGFFYGAYkkpreLN---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 167 GGFSVDNATLTRFFAF-HFCFPFLIAGLAIVHLLFLHQTGANNPTG----LVGDTDKVPFHTYFSYKDVVGFVVLFTGLV 241
Cdd:COG1290 177 GGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 242 MVALFFPNLltDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFR 319
Cdd:COG1290 257 LLAFFFPIN--PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 55979249 320 PLAQILFWVIVINVLLLTWLGGQPVeyPYIFLGQVASFFYFFNLLLLIPIVGLVE 374
Cdd:COG1290 335 PVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
15-356 |
2.09e-116 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 342.30 E-value: 2.09e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 15 VNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFMFIC 94
Cdd:MTH00086 3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 95 LYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSVDNA 174
Cdd:MTH00086 83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 175 TLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTgLVMVALFFPNLLTDP 254
Cdd:MTH00086 163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDP 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 255 ENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLaqILFWVIVINVl 334
Cdd:MTH00086 242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKF--LVFSFIVVNV- 318
|
330 340
....*....|....*....|..
gi 55979249 335 LLTWLGGQPVEYPYIFLGQVAS 356
Cdd:MTH00086 319 ILSWLGQCLVEYPFLFLSQIFS 340
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
11-356 |
1.20e-92 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 281.87 E-value: 1.20e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 11 LLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASF 90
Cdd:MTH00046 1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 91 MFICLYCHIGRGLYYGSYFNVEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFS 170
Cdd:MTH00046 81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 171 VDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGD-TDKVPFHTYFSYKDVVGFVVLFTGLVMVALFFPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 250 LLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVaLAMSIFVLFFIPllhmSRQTSNNFRPLAQILFWVI 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315
|
330 340
....*....|....*....|....*..
gi 55979249 330 VINVLLLTWLGGQPVEYPYIFLGQVAS 356
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFS 342
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
10-207 |
1.57e-83 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 252.67 E-value: 1.57e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 10 PLLKVVNHSFVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGAS 89
Cdd:cd00284 1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 90 FMFICLYCHIGRGLYYGSYFN--VEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWG 167
Cdd:cd00284 81 MFFLMLYLHIFRGLYYGSYKKprELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 55979249 168 GFSVDNATLTRFFAFHFCFPFLIAGLAIVHLLFLHQTGAN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
19-205 |
9.11e-76 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 232.66 E-value: 9.11e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 19 FVDLPVPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFMFICLYCH 98
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 99 IGRGLYYGSYFN--VEAWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSVDNATL 176
Cdd:pfam00033 81 IFRGLYYGGFSYprELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 55979249 177 TRFFAFHFCFPFLIAGLAIVHLLFLHQTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
208-355 |
9.63e-51 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 166.67 E-value: 9.63e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 208 NPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVMVALFFPNLLTDPENYIPANPLVTPVHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 55979249 288 KLGGVVALAMSIFVLFFIPLLHMSRQTSnNFRPLAQILFWVIVINVLLLTWLGGQPVEYPYIFLGQVA 355
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
259-356 |
7.58e-45 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 149.94 E-value: 7.58e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNFRPLAQILFWVIVINVLLLTW 338
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90
....*....|....*...
gi 55979249 339 LGGQPVEYPYIFLGQVAS 356
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIAT 98
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
89-254 |
1.87e-37 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 132.75 E-value: 1.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 89 SFMFICLYCHIGRGLYYGSY-----FNveaWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQ 163
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYrkpreLN---WIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 164 WLWGGFSVDNATLTRFFAF-HFCFPFLIAGLAIVHLLFLHQTGANNPTGLVGDTDKVPFHTYFSYKDVVGFVVLFTGLVM 242
Cdd:pfam13631 78 LLFGGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIG 157
|
170
....*....|..
gi 55979249 243 VALFFPNLLTDP 254
Cdd:pfam13631 158 LAQINPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
34-209 |
1.38e-32 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 121.74 E-value: 1.38e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 34 FGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFMFICLYCHIGRGLYYGSYFNVE- 112
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 113 -AWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSVDNATLTRFFAFHFCFP-FLI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLpWAL 203
|
170
....*....|....*....
gi 55979249 191 AGLAIVHLLFLHQTGANNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| petB |
CHL00070 |
cytochrome b6 |
24-209 |
1.67e-27 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 107.88 E-value: 1.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 24 VPSNISVWWNFGSLLGLCLVSQILTGLFLAMHYTADVNLAFSSVAHICRDVNYGWLLRNLHANGASFMFICLYCHIGRGL 103
Cdd:CHL00070 26 VPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVY 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 104 YYGSYFNVE--AWNIGVVLLIMTMGTAFLGYVLPWGQMSFWGATVITNLASAIPYLGPELVQWLWGGFSVDNATLTRFFA 181
Cdd:CHL00070 106 LTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185
|
170 180
....*....|....*....|....*....
gi 55979249 182 FHFCFPFLI-AGLAIVHLLFLHQTGANNP 209
Cdd:CHL00070 186 LHTFVLPLLtAVFMLMHFLMIRKQGISGP 214
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
259-340 |
6.78e-12 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 63.10 E-value: 6.78e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNF-RPLAQILFwviVINVLLLT 337
Cdd:CHL00058 65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVATTVF---LIGTAVAL 141
|
...
gi 55979249 338 WLG 340
Cdd:CHL00058 142 WLG 144
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
259-340 |
1.48e-11 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 62.12 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNF-RPLAQILFwviVINVLLLT 337
Cdd:TIGR01156 65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFrRPVATTVF---LFGTVVAL 141
|
...
gi 55979249 338 WLG 340
Cdd:TIGR01156 142 WLG 144
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
259-340 |
1.82e-11 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 61.73 E-value: 1.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55979249 259 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVALAMSIFVLFFIPLLHMSRQTSNNF-RPLAQILFwviVINVLLLT 337
Cdd:COG5679 66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFrRPVATAVF---LFGTLVTL 142
|
...
gi 55979249 338 WLG 340
Cdd:COG5679 143 WLG 145
|
|
| |
