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Conserved domains on  [gi|1610633974|ref|YP_009588597|]
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Ycf15 (plastid) [Solanum sparsipilum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf15 pfam10705
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-87 5.41e-55

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


:

Pssm-ID: 463179  Cd Length: 86  Bit Score: 164.87  E-value: 5.41e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1610633974  2 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 ....*.
gi 1610633974 82 YIEFTR 87
Cdd:pfam10705 81 YIEFTR 86
 
Name Accession Description Interval E-value
Ycf15 pfam10705
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-87 5.41e-55

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


Pssm-ID: 463179  Cd Length: 86  Bit Score: 164.87  E-value: 5.41e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1610633974  2 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 ....*.
gi 1610633974 82 YIEFTR 87
Cdd:pfam10705 81 YIEFTR 86
 
Name Accession Description Interval E-value
Ycf15 pfam10705
Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is ...
 2-87 5.41e-55

Chloroplast protein precursor Ycf15 putative; In some species of plants the ycf15 gene is probably not a protein-coding gene because the protein in these species has premature stop codons. Most of the members of the family are hypothetical or uncharacterized.


Pssm-ID: 463179  Cd Length: 86  Bit Score: 164.87  E-value: 5.41e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1610633974  2 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPTGVY 81
Cdd:pfam10705  1 ETLVSSIFWTLAPWKNMLLLKHGRIEILDQNTMYGWYELPKQEFLNSKQPVQIFTTKKYWILFRIGPERRRKAGMPIGVY 80


                 ....*.
gi 1610633974 82 YIEFTR 87
Cdd:pfam10705 81 YIEFTR 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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