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NADH dehydrogenase subunit 7 (chloroplast) [Gossypium mustelinum]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.53
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 1 M NLS AT E KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVP AT R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL V YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 161 GGVAADLPYGW L DKCLDFCDYFLTG IV EYQKLITRNPIFLERVEG I G V IGGEEAINWGLSGPMLRASGI K WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTG VA EYQKLITRNPIFLERVEG V G I IGGEEAINWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 241 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE I R C FDRE R D P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A R R FDRE K D S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 372291818 321 L PR QELY A R M EAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L SK QELY V R V EAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.53
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 1 M NLS AT E KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVP AT R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL V YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 161 GGVAADLPYGW L DKCLDFCDYFLTG IV EYQKLITRNPIFLERVEG I G V IGGEEAINWGLSGPMLRASGI K WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTG VA EYQKLITRNPIFLERVEG V G I IGGEEAINWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 241 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE I R C FDRE R D P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A R R FDRE K D S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 372291818 321 L PR QELY A R M EAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L SK QELY V R V EAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 593.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 7 E KDL M IV NMGP H HPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 E TEE M VL NMGP Q HPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE LVY DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 167 LP Y G W L D K CLD F C DYF LTGIV EY QK L I T R N P IF LE R VE G I GV IGG E E AI NW G LS GP M LRASG IKW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G F L E K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK G V GV LSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 247 WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP YENLEIRCFDRERDPEWNDF E YRFIS - K KPSPT F EL P RQ E 325
Cdd:COG0649 243 FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372291818 326 L YA RM E A P K GELG IF L IG D QSGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V YA AV E S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.03e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 455.26
E-value: 3.03e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE LVY DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 169 YG WL DKCLD F CDY F LTGIVE Y QK L ITR N P I FLE R VE G I GV IGGEE A IN WGL S GPMLR A SGI K WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN WL EEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ G V GV VSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 249 IQWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP Y -- E N LEIRCFDR ER DPEWN dfe YRF I S -- K KPSPT F EL P RQ 324
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK ER MLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 372291818 325 E L Y ARM E A PKGELG IFL I G D QSGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V Y VPI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.14e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 2.14e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 125 I GA Q TPF F Y I FRERE LVY DLFE AA TG M RM M H N YFR I GGVA A DLP Y G W L D K CLD F C DYF LTGIV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H S YFR P GGVA R DLP E G F L E K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 205 G I GV IGG E E A INW G LS GPMLRASG IK WDLRK VDH Y EC YDE F D WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 G V GV LSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 285 GP Y -- ENLE I RCFDR E RDPE - WNDFEYR F is K KPSPT F EL P RQ E L Y ARM EAPKGELG IF L IG D QSGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V Y VAV EAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 372291818 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 902.53
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 1 M NLS AT E KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M TVP AT R KDLMIVNMGPHHPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL V YDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREL I YDLFEAATGMRMMHNYFRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 161 GGVAADLPYGW L DKCLDFCDYFLTG IV EYQKLITRNPIFLERVEG I G V IGGEEAINWGLSGPMLRASGI K WDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGW I DKCLDFCDYFLTG VA EYQKLITRNPIFLERVEG V G I IGGEEAINWGLSGPMLRASGI Q WDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 241 CYDEFDWE I QWQKEGDSLARYLVRI S EMTESIKIIQQALEGIPGGPYENLE I R C FDRE R D P EWNDFEYRFISKKPSPTFE 320
Cdd:CHL00017 241 CYDEFDWE V QWQKEGDSLARYLVRI G EMTESIKIIQQALEGIPGGPYENLE A R R FDRE K D S EWNDFEYRFISKKPSPTFE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 372291818 321 L PR QELY A R M EAPKGELGIFLIGD Q S G FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 L SK QELY V R V EAPKGELGIFLIGD D S V FPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 736.55
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 1 M NLSA T EKDL M IV N M GPHHPSMHGVLRLIVTLDGEDVVDCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE T RTEP M VL N F GPHHPSMHGVLRLIVTLDGEDVVDCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 81 ITVN G PE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE LV YDL F EAATG M R MM - H NYFR 159
Cdd:PRK07415 81 ITVN A PE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE MI YDL W EAATG Q R LI n N NYFR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 160 IGGVAADLPYGWL D KCLDFCDYF LTG I V EY Q KLIT R NPIF LE R V EG I G V I GG EEAINWGLSGPMLRASG I KWDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLPYGWL E KCLDFCDYF GPK I D EY E KLIT N NPIF RR R I EG L G T I SR EEAINWGLSGPMLRASG V KWDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 240 ECYD E FDW EIQ W QK EGD S LARY L VRI S EM T ES I KII Q QA LE GIPGGPYENLE IRCFDRERDP EWN D F E Y RFIS KK PS PTF 319
Cdd:PRK07415 241 ECYD D FDW DVA W ET EGD C LARY R VRI E EM R ES V KII R QA CK GIPGGPYENLE AKRMAEGKKS EWN G F D Y QYVA KK VA PTF 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 372291818 320 EL P RQ ELY A R M E AP KGELGIF LI G DQSGF PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KI P NG ELY V R L E SG KGELGIF IQ G NNDVT PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 593.58
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 7 E KDL M IV NMGP H HPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 E TEE M VL NMGP Q HPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE LVY DLFE AA TG M RM M HNYFRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE KIL DLFE EV TG A RM T HNYFRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 167 LP Y G W L D K CLD F C DYF LTGIV EY QK L I T R N P IF LE R VE G I GV IGG E E AI NW G LS GP M LRASG IKW DLRK VDH Y EC YDE F D 246
Cdd:COG0649 163 LP D G F L E K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK G V GV LSA E D AI AL G VT GP V LRASG VDY DLRK DEP Y SG YDE L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 247 WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G GP YENLEIRCFDRERDPEWNDF E YRFIS - K KPSPT F EL P RQ E 325
Cdd:COG0649 243 FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPPKEEMKTSM E ALIHH f K LVTEG F KV P AG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372291818 326 L YA RM E A P K GELG IF L IG D QSGF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V YA AV E S P R GELG FY L VS D GGTK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
6-393
1.33e-174
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 491.98
E-value: 1.33e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 6 T E KDLMIV N M GP H HP SM HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVNG 85
Cdd:PRK06075 2 A E IRNYTL N F GP Q HP AA HGVLRLI LE LDGE V VV RAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 86 P E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LVY DL F EA A TG M RM M H N Y F R I GGV AA 165
Cdd:PRK06075 82 V E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H A Y I R P GGV RR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 166 DLP Y G W L DKCL DF C DYF LTGIVE Y QK L I T R N P I FLE R VE G I GV IGG E E A INW G LS GPMLRASG IK WDLRK VDH YE C YDE F 245
Cdd:PRK06075 162 DLP D G L L EDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV G V GV VSK E R A LAL G FT GPMLRASG VA WDLRK SQP YE V YDE L 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 246 D WEIQWQ K E GD SLA RYLVR IS EM TE S IK II Q Q A L E -- GI P G GP Y -- ENLE I RCFD R E rdp E WNDFEYRF I S -- K KPSPT F 319
Cdd:PRK06075 242 D FDVPVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPK I APPA R L --- E MKTSMEAL I H hf K LVTEG F 318
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 372291818 320 EL P RQ E L YA RM E A PKGE L G IF L IG D QSGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 319 RV P AG E V YA AV E S PKGE F G VY L VS D GGNK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
11-393
6.72e-161
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 456.47
E-value: 6.72e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 11 M IV N M GP H HPS M HGV L RL IVTL DGE DV V DCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVNGP E QLG 90
Cdd:PRK12322 7 M LL N V GP Q HPS T HGV F RL VLKI DGE II V EAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHAV E TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 91 NIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE LVYD L FEAAT G M R MMH NY F RIGGV AA D L P Y G 170
Cdd:PRK12322 87 GLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE MIIN L LNELC G A R LTF NY M RIGGV KW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 171 W LD K CLD F CD Y FLTGIVE Y QK L I T R N P IFL E RV E G I G VIGG EEAI NWG LSG PM LR AS G IK WDLRK VDH Y EC YD E FD WE I Q 250
Cdd:PRK12322 167 W IE K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K G V G IYSA EEAI SYS LSG VN LR CT G VN WDLRK DEP Y SI YD R FD FD I P 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 251 WQKE GD SLA RY LV R IS E MTE S I KII Q QA L E GI P - G GP yenleircfdrerdpewndfeyrf ISK K PSPTFEL P RQ E L Y A R 329
Cdd:PRK12322 247 VGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP ------------------------ VLA K VPKIIKA P KG E A Y V R 302
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 372291818 330 M E A P K GE L G IFLIG D QSGF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 303 I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
3.03e-160
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 455.26
E-value: 3.03e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 9 DL MI V N M GP H HPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF MI L N L GP Q HPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE LVY DLFEA A TG M RM MHN YFRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE KIL DLFEA I TG A RM HSA YFRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 169 YG WL DKCLD F CDY F LTGIVE Y QK L ITR N P I FLE R VE G I GV IGGEE A IN WGL S GPMLR A SGI K WD L RK VDH YE C YDE F D WE 248
Cdd:TIGR01962 161 EN WL EEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ G V GV VSAKD A LD WGL T GPMLR G SGI D WD I RK SEP YE G YDE Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 249 IQWQKE GD SLA RYL V R IS EM T ESIKII Q Q A LE GI P G GP Y -- E N LEIRCFDR ER DPEWN dfe YRF I S -- K KPSPT F EL P RQ 324
Cdd:TIGR01962 241 VPVGGN GD CYD RYL L R VL EM R ESIKII E Q C LE KM P P GP I ka D N PKLAPPPK ER MLTSM --- EAL I H hf K LVTEG F RV P AG 317
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 372291818 325 E L Y ARM E A PKGELG IFL I G D QSGF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 318 E V Y VPI E S PKGELG FYI I S D GGTK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
2.14e-144
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 410.62
E-value: 2.14e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 125 I GA Q TPF F Y I FRERE LVY DLFE AA TG M RM M H N YFR I GGVA A DLP Y G W L D K CLD F C DYF LTGIV EY QK L I TRN P IF LE R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE KIL DLFE RI TG A RM T H S YFR P GGVA R DLP E G F L E K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 205 G I GV IGG E E A INW G LS GPMLRASG IK WDLRK VDH Y EC YDE F D WEIQWQK EGD SLA RYLVR IS EM TE S IK II Q Q A L EGI P G 284
Cdd:pfam00346 81 G V GV LSA E D A LAL G VT GPMLRASG VP WDLRK DEP Y SG YDE L D FDVPVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 285 GP Y -- ENLE I RCFDR E RDPE - WNDFEYR F is K KPSPT F EL P RQ E L Y ARM EAPKGELG IF L IG D QSGF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPK E EMKT s MEALIHH F -- K LVTEG F RV P AG E V Y VAV EAPKGELG FY L VS D GGTK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 372291818 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
7-393
2.25e-136
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 408.40
E-value: 2.25e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 7 EKDLM I V N M GP H HP SM HG VL R LIVT LDGE DV VD CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN GP 86
Cdd:PRK13292 401 DEETL I L N L GP Q HP GT HG II R FVLK LDGE EI VD MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV 480
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 87 E Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE LVY D LF E AA TG M RM MHNY FRIGGVA A D 166
Cdd:PRK13292 481 E T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE KIF D IV E MI TG G RM HPAW FRIGGVA E D 560
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 167 LP Y GW LDKCLD F CDY F LTGIV EY QK L I T R NPIF LE R VE G I GVI GGE EA IN WG L SGP M LRA S G IK WDLRK VDH Y EC YD E FD 246
Cdd:PRK13292 561 LP E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK G V GVI TRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG YD R FD 640
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 247 W E IQWQKE GD SL ARYLVR IS EM TE S IK I IQ QA LE G I PGG PYENLEI R - CFDRE RD p EWN D F E --- YR F ISKKPS P T fe L P 322
Cdd:PRK13292 641 F E VPTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R y VLPQK RD - TLK D I E sli HH F VNVTRG P A -- P P 717
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 372291818 323 RQ E L YA RM EAPKGE L G I F LIG D QSGFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 718 KG E C YA AI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
1.19e-120
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 361.16
E-value: 1.19e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 9 D L M IV N M GP H HPS M HG VL R LIVT LDGE DV VDC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V NGP E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EI VDC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R ELV YD LF EA A TG M RM MHNY FRIGGVA A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QKI YD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 169 Y GW l D KC L - D F C D YFLTGIV EY Q K LIT RN P I FLE R VE G IGVIGGE EA IN WG LS G PM LRA S GI KW D L RK VDH Y EC Y DE FD W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ G VAAYNAK EA LE WG VT G AG LRA T GI DF D V RK ARP Y SG Y EN FD F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 248 E IQWQKE GD SLA R YL V RIS EM TE S IK II Q Q A L EGI P G GP YEN leircf D -------- R ER dp EWNDF E --- YR F ISKKPS 316
Cdd:PRK11742 429 E VPVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP FKA ------ D hplttppp K ER -- TLQHI E tli TH F LQVSWG 500
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 372291818 317 P T fe L P RQ E LYARM EA P KG ELGIF L IG D Q S GFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 501 P V -- M P AN E SFQMI EA T KG INSYY L TS D G S TMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
2-385
4.50e-101
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 308.05
E-value: 4.50e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 2 NLSATEKDLMIVNM GP H H PSMHGVLRLIVTLD GE DVV D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD 71
Cdd:COG3261 114 EMKVEGEGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA 193
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 72 Y latmf TE A I tvngp E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE L V Y DL F EA A TG M 151
Cdd:COG3261 194 Y ----- CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE R V L DL N EA L TG N 263
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 152 R MMHNYFRI GGV AA DL PYGW L DKC L DFC D YFLTGIV E YQK L ITRN P IF L E R VE G I GV IGG E E A INW G LS GP ML RASG IKW 231
Cdd:COG3261 264 R VLRGINVP GGV RR DL DPEQ L KAI L ERL D ELEEEVK E LVD L FLND P SV L D R LV G T GV LSK E D A RDL G AV GP VA RASG VDR 343
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372291818 232 D L R KVDH Y EC YDE F D WEIQWQK EGD SL AR Y LVR IS E MT ES IKI I Q QALE GI P G GP yenleircfdrerdpewndfeyrf I 311
Cdd:COG3261 344 D V R RDHP Y AA YDE L D FKVVTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ------------------------ I 399
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 372291818 312 SKKPSPTF el P RQ E LYA R M EAP K GEL GIFLIG D QS G FPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 400 RVPVPGLP -- P DG E GLG R V EAP R GEL VHYVRT D GD G RLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
