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Conserved domains on  [gi|255506346|ref|YP_003097143|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Tscherskia triton]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.64e-65

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 193.62  E-value: 1.64e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.64e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 193.62  E-value: 1.64e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.85e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.85e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   18 ILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLVISLLFLS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 255506346   97 TLALGLAYEWKQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 9.85e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.87  E-value: 9.85e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  11 ITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLV 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 255506346  90 ISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.64e-65

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 193.62  E-value: 1.64e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00106   1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00106  81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 2.61e-47

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 147.37  E-value: 2.61e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMA-LSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAM 79
Cdd:MTH00136   1 MNLITTiLTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255506346  80 QSPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 5.22e-44

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 138.97  E-value: 5.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   3 LIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQSP 82
Cdd:MTH00069   2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                         90       100       110
                 ....*....|....*....|....*....|...
gi 255506346  83 TLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00069  82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 8.67e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 130.77  E-value: 8.67e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWT 114
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 2.03e-37

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 122.40  E-value: 2.03e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00042   2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00042  82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-113 4.13e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 108.83  E-value: 4.13e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIM-ALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAM 79
Cdd:MTH00203   1 MNLIMlFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255506346  80 QSPTLMLTLVISLLFLstLALGLAYEWKQKGLEW 113
Cdd:MTH00203  81 QLSSLSLLLAFLFLIL--LTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 1.85e-31

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 106.74  E-value: 1.85e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   18 ILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLVISLLFLS 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELgWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 255506346   97 TLALGLAYEWKQKGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 4.05e-28

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 98.78  E-value: 4.05e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVY-TEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAM 79
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 255506346  80 QSPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWTE 115
Cdd:MTH00148  82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-113 5.98e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 95.61  E-value: 5.98e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 1.63e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 89.67  E-value: 1.63e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALS-TNITLSLILILVAFWLPQLNVYT-EKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00202   1 MLLILFMSiLSILISSLLFLVSWMLSFRSLMDrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 255506346  79 MQSPTLMLTLVISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 11-113 9.85e-24

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 87.87  E-value: 9.85e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  11 ITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLV 89
Cdd:COG0838   16 LGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELgWFGLI 93

                         90       100
                 ....*....|....*....|....
gi 255506346  90 ISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:COG0838   94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 4-114 2.11e-22

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 84.52  E-value: 2.11e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   4 IMALSTNITLSL-ILILVAFWL--PQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00012   3 LMMIPMMISLILpPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILM 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255506346  81 SPTLMLTLVISLLFLSTLALGLAYEWKQKGLEWT 114
Cdd:MTH00012  83 TSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-113 1.16e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 80.14  E-value: 1.16e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAMQ 80
Cdd:MTH00055   6 LGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                         90       100       110
                 ....*....|....*....|....*....|...
gi 255506346  81 SPTLMLTLVIsLLFLSTLALGLAYEWKQKGLEW 113
Cdd:MTH00055  86 QIGLFGFWVM-YLFLIILTIGLIYEWVKGGLEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 13-114 3.48e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.75  E-value: 3.48e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  13 LSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLVIS 91
Cdd:PRK06602  21 LGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIgWLGFVEA 98

                         90       100
                 ....*....|....*....|...
gi 255506346  92 LLFLSTLALGLAYEWKQKGLEWT 114
Cdd:PRK06602  99 MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 2.84e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 76.25  E-value: 2.84e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQ 80
Cdd:MTH00018   1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255506346  81 SPTL-MLTLVISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:MTH00018  79 YNQIaPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 31-113 5.01e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 68.42  E-value: 5.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  31 TEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLVISLLFLSTLALGLAYEWKQK 109
Cdd:MTH00030  41 SEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFNQLnLFSFWIVYTFLIVLAIGLAYEWIKG 118


                 ....
gi 255506346 110 GLEW 113
Cdd:MTH00030 119 GLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 37-114 1.16e-12

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 59.30  E-value: 1.16e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  37 YECGFDPMSSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAMQSPTL-MLTLVISLLFLSTLALGLAYEWKQKGLEW 113
Cdd:PRK07928  41 YECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALgVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118


                 .
gi 255506346 114 T 114
Cdd:PRK07928 119 D 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-113 5.34e-11

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 55.13  E-value: 5.34e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  32 EKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAMQSPTLML-TLVISLLFLSTLALGLAYEWKQKG 110
Cdd:PRK07756  41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGLfALIEMLIFVVMLLVGLAYAWKKKV 118


                 ...
gi 255506346 111 LEW 113
Cdd:PRK07756 119 LQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 14-114 5.41e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.99  E-value: 5.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  14 SLILILvAFWLPQL----NVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTLMLTLV 89
Cdd:CHL00022  18 SLIPIL-AFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVSAF 94

                         90       100
                 ....*....|....*....|....*.
gi 255506346  90 I-SLLFLSTLALGLAYEWKQKGLEWT 114
Cdd:CHL00022  95 IeALIFVLILIVGLVYAWRKGALEWS 120
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 7.42e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 49.67  E-value: 7.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346  33 KAGPYECGFDPMSSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAMQSPTL-MLTLVISLLFLSTLALGLAYEWKQKGL 111
Cdd:PRK08489  47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLgLFGLIEMLLFIVLLTIGFIYAWKKGAL 123


                 ..
gi 255506346 112 EW 113
Cdd:PRK08489 124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 3.75e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.19  E-value: 3.75e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 255506346   1 MNLIMALSTNITLSLILILVAFWLPQLNVYTEKAGPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLpwaMQ 80
Cdd:MTH00092   2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---LV 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 255506346  81 SptLMLTLVISLLFLSTLALGLAYEWKQKGLEWT 114
Cdd:MTH00092  79 S--DFSSLISFFMLMIFIFFGFYMEWWYGKLIWV 110
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-76 1.83e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 35.26  E-value: 1.83e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 255506346  36 PYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
Cdd:MTH00060  40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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