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Conserved domains on  [gi|187763122|ref|YP_001876597|]
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ribosomal protein L33 (chloroplast) [Welwitschia mirabilis]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10000089)

50S ribosomal protein L33

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.38e-30

ribosomal protein L33


:

Pssm-ID: 177033  Cd Length: 66  Bit Score: 101.59  E-value: 1.38e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187763122  1 MPAKTGPRVVVFLECFHCTQKGAQKKFPGVFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERKK 66
Cdd:CHL00104  1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
 
Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.38e-30

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 101.59  E-value: 1.38e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187763122  1 MPAKTGPRVVVFLECFHCTQKGAQKKFPGVFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERKK 66
Cdd:CHL00104  1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 6-65 2.30e-11

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 52.47  E-value: 2.30e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763122  6 GPRVVVFLECFHCTQkgaqkkfpgvFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:COG0267   3 GMREKITLACTECKG----------RNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
Ribosomal_L33 pfam00471
Ribosomal protein L33;
31-65 5.56e-10

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 48.96  E-value: 5.56e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 187763122  31 FRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:pfam00471 12 RNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 3-65 1.89e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 47.83  E-value: 1.89e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187763122   3 AKTGPRVVVFLECFHCTQKgaqkkfpgvfRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:TIGR01023  2 AKKGARELIRLVCTACTGI----------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Name Accession Description Interval E-value
rpl33 CHL00104
ribosomal protein L33
 1-66 1.38e-30

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 101.59  E-value: 1.38e-30
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187763122  1 MPAKTGPRVVVFLECFHCTQKGAQKKFPGVFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERKK 66
Cdd:CHL00104  1 MAKGKDVRVTVILECTSCVRNGVNKESTGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHKEIKK 66
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 6-65 2.30e-11

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 52.47  E-value: 2.30e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763122  6 GPRVVVFLECFHCTQkgaqkkfpgvFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:COG0267   3 GMREKITLACTECKG----------RNYTTTKNKRNTPERLELKKYCPKCRKHTLHKETK 52
rpmG PRK00504
50S ribosomal protein L33; Validated
 6-65 6.30e-11

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 51.46  E-value: 6.30e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 187763122  6 GPRVVVFLECFHCTQKgaqkkfpgvfRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:PRK00504  1 MMRKKITLACTECKSR----------NYTTTKNKKNTPERLELKKFCPRCNKHTLHKETK 50
rpmG PRK00595
50S ribosomal protein L33; Validated
 3-65 2.69e-10

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 49.81  E-value: 2.69e-10
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187763122  3 AKTGPRVVVFLECFHCTQkgaqkkfpgvFRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:PRK00595  1 AAKGMRVKIKLESTEGTG----------RFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKETK 53
Ribosomal_L33 pfam00471
Ribosomal protein L33;
31-65 5.56e-10

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 48.96  E-value: 5.56e-10
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 187763122  31 FRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:pfam00471 12 RNYTTTKNKKNTPERLELKKYCPKCRKHTLHKETK 46
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 3-65 1.89e-09

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 47.83  E-value: 1.89e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187763122   3 AKTGPRVVVFLECFHCTQKgaqkkfpgvfRYITKKNRHNKSTPLELKKFCPFCLKHTIHKERK 65
Cdd:TIGR01023  2 AKKGARELIRLVCTACTGI----------NYTTTKNRRNKPEKLELRKYCPVCRKHVLHKEAK 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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