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Conserved domains on  [gi|139424502|ref|YP_001129468|]
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BRLF1 [Human herpesvirus 4 type 2]

Protein Classification

Rta and bZIP domain domain-containing protein( domain architecture ID 12043305)

Rta and bZIP domain-containing protein similar to Rhesus monkey rhadinovirus (RRV) R-Rta and R-bZIP which R-Rta is a potent transcriptional activator and R-bZIP forms homodimers in vivo

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 81-584 0e+00

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


:

Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 606.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502   81 ILRNNRVRRRAENAGNDACSIACPIVMRYVLDHLIVVTDRFFIQAPSNRVMIPATIGTAMYKLLKHSRVRAYTYSKVLGV 160
Cdd:pfam03326   1 LFRNYRVRRRAENAGNDPCAIASQQIIRFVTERLLVCTDRFFLTAPCSGVMLPATICKAMYKLLKESRVRCLTYWKVLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  161 DRAAIMASGKQVVEHLNRMEKEGLLSSKFKAFCKWVFTYPVLEEMFQTM--VSSKTGHLTDDVKDVRALIKTLPRASYSS 238
Cdd:pfam03326  81 GRRAIMASGKQVLTHYNTLRKEGLLSPKFKAFCKLVFPPPVLEEVFQPLnvVSKGTGHLTDDVKDVRALIKRLPRATYFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  239 HAGQRSyVSGVLPACLLSTKSKAVETPILVSGADRMDEELMGNDGGASHtearysESGQFHAFTDELESL---------P 309
Cdd:pfam03326 161 HAGQRS-VSGVLPECLLSTKSPAVETGILVSGADDMSEELMGPDGGLSH------PAGSFFAFTDELESLirdpepryqP 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  310 SPTMP---LKPGAQsadcgdsssSSSDSGNSDTEQSEREEARAEAPRLRAPK-SRRTSRPNRGQT--------------- 370
Cdd:pfam03326 234 SPTMPqqaLKPGAQ---------SSDTSGVSDTEQSARQTATAEPQRLQAPGfSRSTSRPARGQTaqyflaaqqhgvvsl 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  371 --------------------------------PCPSNA-------EEPEQPWIAAVHQESDERPIFPHPSKPTFLPPVKR 411
Cdd:pfam03326 305 fpstatlvpiagstgvtevvsyghnstspsstPCPSTAvteadhqTEPEVPWIATAHQESDQRPIGPGPEKPTFLPPVGG 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  412 K---KGLRDSREGMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVP 488
Cdd:pfam03326 385 KqffQGLRDSRSTSFLTAPEATSAISDVFQGTEVCQPKRIRALHPPGSPSANRPLPSSLAPTPTGPVHEPGSSLTPATVP 464

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  489 RPLDPAPAVTPEASHLLEDPDEETSQavkalremadtviPQKEEAAICGQMDLNHPPPRGHLDELTTTLESMTEDLNLDS 568
Cdd:pfam03326 465 QPLDAAPVATPEASHELQPPDEETPQ-------------PLDEDQALCGQQDASHPPPRGQLDELTTTLESMTEDLNLDS 531

                         570
                  ....*....|....*.
gi 139424502  569 PLTPELNEILDTFLND 584
Cdd:pfam03326 532 PLSPEDNEILETILND 547
 
Name Accession Description Interval E-value
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 81-584 0e+00

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 606.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502   81 ILRNNRVRRRAENAGNDACSIACPIVMRYVLDHLIVVTDRFFIQAPSNRVMIPATIGTAMYKLLKHSRVRAYTYSKVLGV 160
Cdd:pfam03326   1 LFRNYRVRRRAENAGNDPCAIASQQIIRFVTERLLVCTDRFFLTAPCSGVMLPATICKAMYKLLKESRVRCLTYWKVLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  161 DRAAIMASGKQVVEHLNRMEKEGLLSSKFKAFCKWVFTYPVLEEMFQTM--VSSKTGHLTDDVKDVRALIKTLPRASYSS 238
Cdd:pfam03326  81 GRRAIMASGKQVLTHYNTLRKEGLLSPKFKAFCKLVFPPPVLEEVFQPLnvVSKGTGHLTDDVKDVRALIKRLPRATYFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  239 HAGQRSyVSGVLPACLLSTKSKAVETPILVSGADRMDEELMGNDGGASHtearysESGQFHAFTDELESL---------P 309
Cdd:pfam03326 161 HAGQRS-VSGVLPECLLSTKSPAVETGILVSGADDMSEELMGPDGGLSH------PAGSFFAFTDELESLirdpepryqP 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  310 SPTMP---LKPGAQsadcgdsssSSSDSGNSDTEQSEREEARAEAPRLRAPK-SRRTSRPNRGQT--------------- 370
Cdd:pfam03326 234 SPTMPqqaLKPGAQ---------SSDTSGVSDTEQSARQTATAEPQRLQAPGfSRSTSRPARGQTaqyflaaqqhgvvsl 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  371 --------------------------------PCPSNA-------EEPEQPWIAAVHQESDERPIFPHPSKPTFLPPVKR 411
Cdd:pfam03326 305 fpstatlvpiagstgvtevvsyghnstspsstPCPSTAvteadhqTEPEVPWIATAHQESDQRPIGPGPEKPTFLPPVGG 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  412 K---KGLRDSREGMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVP 488
Cdd:pfam03326 385 KqffQGLRDSRSTSFLTAPEATSAISDVFQGTEVCQPKRIRALHPPGSPSANRPLPSSLAPTPTGPVHEPGSSLTPATVP 464

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  489 RPLDPAPAVTPEASHLLEDPDEETSQavkalremadtviPQKEEAAICGQMDLNHPPPRGHLDELTTTLESMTEDLNLDS 568
Cdd:pfam03326 465 QPLDAAPVATPEASHELQPPDEETPQ-------------PLDEDQALCGQQDASHPPPRGQLDELTTTLESMTEDLNLDS 531

                         570
                  ....*....|....*.
gi 139424502  569 PLTPELNEILDTFLND 584
Cdd:pfam03326 532 PLSPEDNEILETILND 547
PHA03247 PHA03247
large tegument protein UL36; Provisional
 345-521 2.92e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 2.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  345 EEARAEAPRLRAPKSRRTSRPNR-----------GQTPC-PSNAEEPEQPWIAAVHQESDE-----------RPI----- 396
Cdd:PHA03247  270 ETARGATGPPPPPEAAAPNGAAAppdgvwgaalaGAPLAlPAPPDPPPPAPAGDAEEEDDEdgamevvsplpRPRqhypl 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  397 -FPHPSKPTFLPPvkrkKGLRDSREGMFLPK------------PEAGSAISDVFEGREVCQPKRIRPFHPPgSPWANrPL 463
Cdd:PHA03247  350 gFPKRRRPTWTPP----SSLEDLSAGRHHPKraslptrkrrsaRHAATPFARGPGGDDQTRPAAPVPASVP-TPAPT-PV 423

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  464 PASLAPTPTGP--VHEPVGSLTPAPVPRPLDPAPAVTPEAShlleDPDEETSQAVKALRE 521
Cdd:PHA03247  424 PASAPPPPATPlpSAEPGSDDGPAPPPERQPPAPATEPAPD----DPDDATRKALDALRE 479
 
Name Accession Description Interval E-value
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 81-584 0e+00

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 606.31  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502   81 ILRNNRVRRRAENAGNDACSIACPIVMRYVLDHLIVVTDRFFIQAPSNRVMIPATIGTAMYKLLKHSRVRAYTYSKVLGV 160
Cdd:pfam03326   1 LFRNYRVRRRAENAGNDPCAIASQQIIRFVTERLLVCTDRFFLTAPCSGVMLPATICKAMYKLLKESRVRCLTYWKVLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  161 DRAAIMASGKQVVEHLNRMEKEGLLSSKFKAFCKWVFTYPVLEEMFQTM--VSSKTGHLTDDVKDVRALIKTLPRASYSS 238
Cdd:pfam03326  81 GRRAIMASGKQVLTHYNTLRKEGLLSPKFKAFCKLVFPPPVLEEVFQPLnvVSKGTGHLTDDVKDVRALIKRLPRATYFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  239 HAGQRSyVSGVLPACLLSTKSKAVETPILVSGADRMDEELMGNDGGASHtearysESGQFHAFTDELESL---------P 309
Cdd:pfam03326 161 HAGQRS-VSGVLPECLLSTKSPAVETGILVSGADDMSEELMGPDGGLSH------PAGSFFAFTDELESLirdpepryqP 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  310 SPTMP---LKPGAQsadcgdsssSSSDSGNSDTEQSEREEARAEAPRLRAPK-SRRTSRPNRGQT--------------- 370
Cdd:pfam03326 234 SPTMPqqaLKPGAQ---------SSDTSGVSDTEQSARQTATAEPQRLQAPGfSRSTSRPARGQTaqyflaaqqhgvvsl 304

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  371 --------------------------------PCPSNA-------EEPEQPWIAAVHQESDERPIFPHPSKPTFLPPVKR 411
Cdd:pfam03326 305 fpstatlvpiagstgvtevvsyghnstspsstPCPSTAvteadhqTEPEVPWIATAHQESDQRPIGPGPEKPTFLPPVGG 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  412 K---KGLRDSREGMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVP 488
Cdd:pfam03326 385 KqffQGLRDSRSTSFLTAPEATSAISDVFQGTEVCQPKRIRALHPPGSPSANRPLPSSLAPTPTGPVHEPGSSLTPATVP 464

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  489 RPLDPAPAVTPEASHLLEDPDEETSQavkalremadtviPQKEEAAICGQMDLNHPPPRGHLDELTTTLESMTEDLNLDS 568
Cdd:pfam03326 465 QPLDAAPVATPEASHELQPPDEETPQ-------------PLDEDQALCGQQDASHPPPRGQLDELTTTLESMTEDLNLDS 531

                         570
                  ....*....|....*.
gi 139424502  569 PLTPELNEILDTFLND 584
Cdd:pfam03326 532 PLSPEDNEILETILND 547
PHA03247 PHA03247
large tegument protein UL36; Provisional
 345-521 2.92e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 2.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  345 EEARAEAPRLRAPKSRRTSRPNR-----------GQTPC-PSNAEEPEQPWIAAVHQESDE-----------RPI----- 396
Cdd:PHA03247  270 ETARGATGPPPPPEAAAPNGAAAppdgvwgaalaGAPLAlPAPPDPPPPAPAGDAEEEDDEdgamevvsplpRPRqhypl 349

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  397 -FPHPSKPTFLPPvkrkKGLRDSREGMFLPK------------PEAGSAISDVFEGREVCQPKRIRPFHPPgSPWANrPL 463
Cdd:PHA03247  350 gFPKRRRPTWTPP----SSLEDLSAGRHHPKraslptrkrrsaRHAATPFARGPGGDDQTRPAAPVPASVP-TPAPT-PV 423

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  464 PASLAPTPTGP--VHEPVGSLTPAPVPRPLDPAPAVTPEAShlleDPDEETSQAVKALRE 521
Cdd:PHA03247  424 PASAPPPPATPlpSAEPGSDDGPAPPPERQPPAPATEPAPD----DPDDATRKALDALRE 479
PHA03247 PHA03247
large tegument protein UL36; Provisional
 309-515 1.23e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  309 PSPTMPLKPGAQSADCGDSSSSSSDSGNSDTEQSEREEARAEAPrlrAPKSRRTSRPNRGQTPCPSNAEEPEQPWIAAVH 388
Cdd:PHA03247 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP---AVASLSESRESLPSPWDPADPPAAVLAPAAALP 2819

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  389 QESDERPIFPHPSKPTFLPPvkrkkglrdsregmflPKPEAGSAISDVFEGREVcqpkrirpfhpPGSPWANRPLPASLA 468
Cdd:PHA03247 2820 PAASPAGPLPPPTSAQPTAP----------------PPPPGPPPPSLPLGGSVA-----------PGGDVRRRPPSRSPA 2872

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 139424502  469 PTPTGPVHEPVGSLTPAPVPR--------PLDPAPAVTPEASHLLEDPDEETSQA 515
Cdd:PHA03247 2873 AKPAAPARPPVRRLARPAVSRstesfalpPDQPERPPQPQAPPPPQPQPQPPPPP 2927
dnaA PRK14086
chromosomal replication initiator protein DnaA;
349-503 5.57e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.89  E-value: 5.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 349 AEAPRLRAPKSRRTSRPNRGQTP------CPSNAEEPEQPWIAAVHQESDERPIFP---HPSKPTFLPPVKRKKGLRDSR 419
Cdd:PRK14086  92 AGEPAPPPPHARRTSEPELPRPGrrpyegYGGPRADDRPPGLPRQDQLPTARPAYPayqQRPEPGAWPRAADDYGWQQQR 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 420 EGmFLPKPEAGSAISDVFEGREVCQP---------KRIRPFHPPGSPW-------ANRPLPASLA-------PTPTGPVH 476
Cdd:PRK14086 172 LG-FPPRAPYASPASYAPEQERDREPydagrpeydQRRRDYDHPRPDWdrprrdrTDRPEPPPGAghvhrggPGPPERDD 250

                        170       180
                 ....*....|....*....|....*...
gi 139424502 477 EPVGSLTP-APVPRPLDPAPAVTPEASH 503
Cdd:PRK14086 251 APVVPIRPsAPGPLAAQPAPAPGPGEPT 278
PHA03247 PHA03247
large tegument protein UL36; Provisional
 339-499 2.56e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 2.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  339 TEQSEREEARAEAPRLRAPKSRRTSRPNRGQ-TPCPSNAEEPEQP----WIAAVHQESDERPIFPHPSKPTFLPPVKRkk 413
Cdd:PHA03247 2583 TSRARRPDAPPQSARPRAPVDDRGDPRGPAPpSPLPPDTHAPDPPppspSPAANEPDPHPPPTVPPPERPRDDPAPGR-- 2660

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  414 gLRDSREGMFLPKPEAGSAISDVFEGREVCQP-----KRIRPfHPPGSPWANRPLPASLApTPTGPVHEPVGSLTPAPVP 488
Cdd:PHA03247 2661 -VSRPRRARRLGRAAQASSPPQRPRRRAARPTvgsltSLADP-PPPPPTPEPAPHALVSA-TPLPPGPAAARQASPALPA 2737

                         170
                  ....*....|.
gi 139424502  489 RPLDPAPAVTP 499
Cdd:PHA03247 2738 APAPPAVPAGP 2748
Gag_spuma pfam03276
Spumavirus gag protein;
344-499 3.89e-03

Spumavirus gag protein;


Pssm-ID: 460872 [Multi-domain]  Cd Length: 614  Bit Score: 40.12  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  344 REEARAEAPRLRAPKSRRTSRPNRGQTPCPSNAEEPEQPWIAAVHQESderPIFPHPSKPTflPPVKRKKGLRDSREGMF 423
Cdd:pfam03276 161 LALREQEAEALRIGLAEISPGAQGGIPPGASFSGLPSLPAIGGIHLPA---IPGIHARAPP--GNIARSLGDDIMPSLGD 235

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 139424502  424 LPKPEAGSAISDVfegrevcQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVPrPLDPAPAVTP 499
Cdd:pfam03276 236 AGMPQPRFAFHPG-------NPFAEAEGHPFAEAEGERPRDIPRAPRIDAPSAPAIPAIQPIAPP-MIPPIGAPIP 303
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
361-507 4.13e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 4.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 361 RTSRPNRGQTPCPSNAEEPEQPWIAAVHQESDERPIFPHPSKPTFLPPVKRKKGLRDSREGMFLPKPEAGSAISdvfegr 440
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAAR------ 437

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 139424502 441 evcQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVPRPLDPAPAVTPEASHLLED 507
Cdd:PRK12323 438 ---QASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
377-501 4.94e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 39.97  E-value: 4.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 377 EEPEQPWIAAVHQESDERPIFPHPS-KPTFLPPVKRKKGLRDSREGMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPG 455
Cdd:PRK12727  48 EELVQRALETARSDTPATAAAPAPApQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAA 127

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 139424502 456 SP--WANRPLPAS--LAPTPTGPVHEPVGS-------------LTPAPVPRPLDPAPAVTPEA 501
Cdd:PRK12727 128 APvrAASIPSPAAqaLAHAAAVRTAPRQEHalsavpeqlfadfLTTAPVPRAPVQAPVVAAPA 190
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 347-521 5.80e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 5.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 347 ARAEAPRLRAPKSRRTSRPNRGQTPCPSNAEEPEQPwiaavhQESDERPIFPHPSKPTFLPPVkrkkglrdsregmflPK 426
Cdd:PRK07764 376 ARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPA------PAAAAPAAAAAPAPAAAPQPA---------------PA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 427 PEAGSAIsdvfEGREVCQPKRIRPFHPPGSPWANRPLPASLAPTPTGPVHEPVGSLTPAPVPRPLDPAPAVTPEASHLLE 506
Cdd:PRK07764 435 PAPAPAP----PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510

                        170
                 ....*....|....*
gi 139424502 507 DPDEETSQAVKALRE 521
Cdd:PRK07764 511 TLRERWPEILAAVPK 525
PHA03247 PHA03247
large tegument protein UL36; Provisional
 309-524 7.21e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 7.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  309 PSPTMPLKPGAQSADCGDSSSSSSDSGNSDTEQSEREEARAEAPRL-RAPKSRRTSRPNRGQTP-------CPSNAEEPE 380
Cdd:PHA03247 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLaPAAALPPAASPAGPLPPptsaqptAPPPPPGPP 2846

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  381 QP------WIAA---VHQESDERPIFPHPSKPTFlPPVKR--KKGLRDSREGMFLPKPEAGSAISDVFEGREVCQPKRIR 449
Cdd:PHA03247 2847 PPslplggSVAPggdVRRRPPSRSPAAKPAAPAR-PPVRRlaRPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502  450 PFHP-PGSPWANRPlPASLAPT--------PTGPVHEP-VGSLTP---------APVPRPLDPAPAVTPEASHLLEDPDE 510
Cdd:PHA03247 2926 PPQPqPPPPPPPRP-QPPLAPTtdpagagePSGAVPQPwLGALVPgrvavprfrVPQPAPSREAPASSTPPLTGHSLSRV 3004

                         250
                  ....*....|....
gi 139424502  511 ETSQAVKALREMAD 524
Cdd:PHA03247 3005 SSWASSLALHEETD 3018
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 345-534 7.63e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.20  E-value: 7.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 345 EEARAEAPRLRAPKSRR---------TSRPNRGQTPCPSNAEEPEQPWIAAVHQESDERPIFPHPSKPTflPPVKRKKGL 415
Cdd:PRK07764 598 EGPPAPASSGPPEEAARpaapaapaaPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG--DGWPAKAGG 675

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 139424502 416 RDSREGMFLPKPEAGSAISDVFEGREVCQPKRIRPFHPPGSPWANRPLPASLA-----------PTPTGPVHEPVGSLTP 484
Cdd:PRK07764 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGAsapspaaddpvPLPPEPDDPPDPAGAP 755

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 139424502 485 APVPRPLDPAPAVTPEASHLLEDPDEETSQAVKALREMADTVIPQKEEAA 534
Cdd:PRK07764 756 AQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVA 805
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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